WormBase Tree Display for Gene: WBGene00009824
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WBGene00009824 | SMap | S_parent | Sequence | F47G4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | gpdh-1 | Person_evidence | WBPerson1851 | |||
Sequence_name | F47G4.3 | ||||||
Molecular_name | F47G4.3 | ||||||
F47G4.3.1 | |||||||
CE18701 | |||||||
Other_name | CELE_F47G4.3 | Accession_evidence | NDB | BX284601 | |||
Public_name | gpdh-1 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gpdh | ||||||
Allele (40) | |||||||
Strain | WBStrain00032072 | ||||||
WBStrain00048030 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (49) | |||||||
Paralog | WBGene00010778 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | gpdh-1 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases; gpdh-1 mRNA expression is upregulated in response to hypertonicity, suggesting that GPDH-1 does play a role in osmotic stress adaptation in C. elegans via glycerol biosynthesis; regulation of gpdh-1 expression is controlled, in part, by a pathway that includes the OSM-8 mucin and the PTR-23 Patched-like receptor. | Paper_evidence | WBPaper00006432 | |||
WBPaper00038064 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 20 Apr 2011 00:00:00 | ||||||
Automated_description | Predicted to enable glycerol-3-phosphate dehydrogenase (quinone) activity. Predicted to be involved in NADH oxidation and glycerol-3-phosphate metabolic process. Predicted to be located in cytosol. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Expressed in hypodermis and intestine. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Is an ortholog of human GPD1 (glycerol-3-phosphate dehydrogenase 1) and GPD1L (glycerol-3-phosphate dehydrogenase 1 like). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:28956) | ||
Molecular_info | Corresponding_CDS | F47G4.3 | |||||
Corresponding_transcript | F47G4.3.1 | ||||||
Other_sequence | GO238924.1 | ||||||
Associated_feature (14) | |||||||
Experimental_info | RNAi_result | WBRNAi00032450 | Inferred_automatically | RNAi_primary | |||
WBRNAi00003699 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113945 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047681 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr3986 | ||||||
Expr1010915 | |||||||
Expr1034292 | |||||||
Expr1151522 | |||||||
Expr2012209 | |||||||
Expr2030445 | |||||||
Drives_construct | WBCnstr00000751 | ||||||
WBCnstr00008693 | |||||||
WBCnstr00031890 | |||||||
WBCnstr00038242 | |||||||
Construct_product | WBCnstr00031890 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (287) | |||||||
Interaction (173) | |||||||
Map_info | Map | I | Position | 23.0163 | Error | 0.010903 | |
Positive | Positive_clone | F47G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (32) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |