WormBase Tree Display for Gene: WBGene00009743
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| WBGene00009743 | SMap | S_parent | Sequence | F45H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sptf-1 | Person_evidence | WBPerson291 | |||||
| Sequence_name | F45H11.1 | ||||||||
| Molecular_name | F45H11.1a | ||||||||
| F45H11.1a.1 | |||||||||
| CE16055 | |||||||||
| F45H11.1b | |||||||||
| CE38353 | |||||||||
| F45H11.1b.1 | |||||||||
| F45H11.1b.2 | |||||||||
| Other_name | CELE_F45H11.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sptf-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00009743 | |||||
| WormFlux | gene | WBGene00009743 | |||||||
| NDB | locus_tag | CELE_F45H11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009743|UniProtKB=Q93727 | |||||||
| family | PTHR23235 | ||||||||
| NCBI | gene | 172909 | |||||||
| RefSeq | protein | NM_001026294.4 | |||||||
| NM_001373640.2 | |||||||||
| SwissProt | UniProtAcc | Q93727 | |||||||
| UniProt_GCRP | UniProtAcc | Q93727 | |||||||
| OMIM | gene | 606633 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 15 Dec 2006 15:03:44 | WBPerson1847 | Name_change | CGC_name | sptf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sptf | ||||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086519 | ||||||||
| 00086520 | |||||||||
| 00086521 | |||||||||
| 00086522 | |||||||||
| 00086523 | |||||||||
| 00086524 | |||||||||
| 00086525 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00003480 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007772 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018990 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009998 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00043705 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012735 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011926 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in neuron differentiation and positive regulation of gene expression. Expressed in ASJ; epithelial cell; intestinal cell; and pharyngeal cell. Human ortholog(s) of this gene implicated in aortic valve stenosis and osteogenesis imperfecta type 12. Is an ortholog of human SP7 (Sp7 transcription factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110348 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17321) | ||||
| DOID:1712 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17321) | ||||||
| Molecular_info | Corresponding_CDS | F45H11.1a | |||||||
| F45H11.1b | |||||||||
| Corresponding_transcript | F45H11.1a.1 | ||||||||
| F45H11.1b.1 | |||||||||
| F45H11.1b.2 | |||||||||
| Other_sequence | Oden_isotig21866 | ||||||||
| Hbac_isotig03628 | |||||||||
| Dviv_isotig17702 | |||||||||
| JI174120.1 | |||||||||
| HBC12355_1 | |||||||||
| Acan_isotig12867 | |||||||||
| EX913194.1 | |||||||||
| Associated_feature (13) | |||||||||
| Gene_product_binds | WBsf977977 | ||||||||
| WBsf977979 | |||||||||
| Transcription_factor | WBTranscriptionFactor000271 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00000314 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032329 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092971 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047450 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12273 | ||||||||
| Expr1014297 | |||||||||
| Expr1034267 | |||||||||
| Expr1151289 | |||||||||
| Expr1200049 | |||||||||
| Expr2016101 | |||||||||
| Expr2034336 | |||||||||
| Drives_construct | WBCnstr00020257 | ||||||||
| WBCnstr00020268 | |||||||||
| WBCnstr00031955 | |||||||||
| Construct_product | WBCnstr00016561 | ||||||||
| WBCnstr00016704 | |||||||||
| WBCnstr00020268 | |||||||||
| WBCnstr00031955 | |||||||||
| WBCnstr00038838 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000525178 | ||||||||
| WBInteraction000525179 | |||||||||
| Map_info | Map | I | Position | 4.93617 | Error | 0.003812 | |||
| Positive | Positive_clone | F45H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00030510 | |||||||||
| WBPaper00034496 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046530 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
