WormBase Tree Display for Gene: WBGene00009583
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| WBGene00009583 | SMap | S_parent | Sequence | F40F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aagr-3 | Paper_evidence | WBPaper00036069 | |||||
| Person_evidence | WBPerson344 | ||||||||
| Sequence_name | F40F9.6 | ||||||||
| Molecular_name | F40F9.6a | ||||||||
| F40F9.6a.1 | |||||||||
| CE05855 | |||||||||
| F40F9.6b | |||||||||
| CE23714 | |||||||||
| F40F9.6c | |||||||||
| CE47747 | |||||||||
| F40F9.6b.1 | |||||||||
| F40F9.6c.1 | |||||||||
| Other_name | CELE_F40F9.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | aagr-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 16 Apr 2010 14:03:05 | WBPerson2970 | Name_change | CGC_name | aagr-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aagr | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00001650 | ||||||||
| WBStrain00002185 | |||||||||
| WBStrain00002841 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (58) | |||||||||
| Paralog | WBGene00017071 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019895 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018682 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables alpha-1,4-glucosidase activity. Involved in glycogen catabolic process. Predicted to be located in lysosome. Human ortholog(s) of this gene implicated in polycystic kidney disease 3 and polycystic liver disease. Is an ortholog of human GANAB (glucosidase II alpha subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080322 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4138) | ||||
| DOID:0110860 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4138) | ||||||
| DOID:0050770 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4138) | ||||||
| Molecular_info | Corresponding_CDS | F40F9.6a | |||||||
| F40F9.6b | |||||||||
| F40F9.6c | |||||||||
| Corresponding_transcript | F40F9.6a.1 | ||||||||
| F40F9.6b.1 | |||||||||
| F40F9.6c.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature | WBsf655585 | ||||||||
| WBsf669249 | |||||||||
| WBsf669250 | |||||||||
| WBsf234268 | |||||||||
| WBsf234269 | |||||||||
| WBsf234270 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046888 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007994 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram841 | ||||||||
| Chronogram1826 | |||||||||
| Expr6016 | |||||||||
| Expr6017 | |||||||||
| Expr1017706 | |||||||||
| Expr1034194 | |||||||||
| Expr1150754 | |||||||||
| Expr2009050 | |||||||||
| Expr2027286 | |||||||||
| Drives_construct | WBCnstr00002488 | ||||||||
| WBCnstr00003363 | |||||||||
| WBCnstr00004358 | |||||||||
| WBCnstr00032084 | |||||||||
| Construct_product | WBCnstr00032084 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (100) | |||||||||
| Map_info | Map | V | Position | 2.1155 | Error | 0.002815 | |||
| Positive | Positive_clone | F40F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| WBPaper00036069 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041022 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
