WormBase Tree Display for Gene: WBGene00009560
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WBGene00009560 | SMap | S_parent | Sequence | F39D8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | psa-3 | Person_evidence | WBPerson3204 | |||||
Sequence_name | F39D8.2 | ||||||||
Molecular_name (12) | |||||||||
Other_name | CELE_F39D8.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | psa-3 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00009560 | |||||
WormFlux | gene | WBGene00009560 | |||||||
NDB | locus_tag | CELE_F39D8.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009560|UniProtKB=Q0G825 | |||||||
family | PTHR11850 | ||||||||
NCBI | gene | 181631 | |||||||
RefSeq | protein | NM_001313418.3 | |||||||
NM_001270334.3 | |||||||||
NM_001083296.5 | |||||||||
NM_001083297.5 | |||||||||
SwissProt | UniProtAcc | Q0G825 | |||||||
UniProt_GCRP | UniProtAcc | Q0G825 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 13 Jul 2005 13:25:29 | WBPerson2970 | Name_change | CGC_name | psa-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | psa | ||||||||
Allele (210) | |||||||||
Strain | WBStrain00008466 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00055778 | ||||||||
00055779 | |||||||||
00055780 | |||||||||
00055781 | |||||||||
00055782 | |||||||||
00055783 | |||||||||
Ortholog (21) | |||||||||
Structured_description | Concise_description | psa-3 encodes a Meis-related protein; along with nob-1 and ceh-20, psa-3 is required for the proper asymmetric cell division of the T hypodermal cell; a PSA-3::GFP reporter fusino is expressed in the T hypodermal cell, head neurons, posterior gut cells, hypodermal cells (hyp7, hyp9, and hyp10), and the P blast cells; psa-3 expression is regulated by the POP-1 TCF transcription factor, as well as CEH-20/Pbx and the NOB-1 homeodomain protein; PSA-3 physically interacts with CEH-20 and regulates its nuclear localization. | Paper_evidence | WBPaper00027741 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 15 Feb 2014 00:00:00 | ||||||||
Automated_description | Enables transcription coactivator binding activity. Involved in regulation of asymmetric cell division. Located in nucleus. Expressed in several structures, including TL.aa; TL.pa; TR.aa; TR.pa; and hypodermal cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F39D8.2a | |||||||
F39D8.2b | |||||||||
F39D8.2c | |||||||||
F39D8.2d | |||||||||
Corresponding_CDS_history (3) | |||||||||
Corresponding_transcript | F39D8.2a.1 | ||||||||
F39D8.2b.1 | |||||||||
F39D8.2c.1 | |||||||||
F39D8.2d.1 | |||||||||
Other_sequence | Tcol_isotig16426 | ||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result (8) | ||||||||
Expr_pattern | Expr4287 | ||||||||
Expr9858 | |||||||||
Expr1017410 | |||||||||
Expr1034181 | |||||||||
Expr1150644 | |||||||||
Expr2015130 | |||||||||
Expr2033368 | |||||||||
Drives_construct | WBCnstr00009746 | ||||||||
WBCnstr00032104 | |||||||||
Construct_product | WBCnstr00009746 | ||||||||
WBCnstr00032104 | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (112) | |||||||||
Interaction (11) | |||||||||
WBProcess | WBbiopr:00000073 | ||||||||
Map_info | Map | X | Position | 22.5924 | Error | 0.030916 | |||
Positive | Positive_clone | F39D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5395 | |||||||
5655 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010125 | ||||||||
WBPaper00010126 | |||||||||
WBPaper00011974 | |||||||||
WBPaper00027741 | |||||||||
WBPaper00030889 | |||||||||
WBPaper00044833 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |