WormBase Tree Display for Gene: WBGene00009479
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| WBGene00009479 | SMap | S_parent | Sequence | F36F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fcp-1 | Person_evidence | WBPerson1711 | |||||
| Sequence_name | F36F2.6 | ||||||||
| Molecular_name | F36F2.6 | ||||||||
| F36F2.6.1 | |||||||||
| CE39366 | |||||||||
| Other_name | CELE_F36F2.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fcp-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Jun 2005 10:01:00 | WBPerson2970 | Name_change | CGC_name | fcp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fcp | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Contained_in_operon | CEOP1516 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00012236 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | fcp-1 encodes the C. elegans ortholog of FCP1 phosphatase, an enzyme required for dephosphorylation of the C-terminal domain (CTD) of RNA polymerase II and hence, transcriptional regulation; loss of fcp-1 via large-scale RNAi experiments results in nearly 100% embryonic lethality. | Paper_evidence | WBPaper00005411 | |||||
| WBPaper00025054 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Feb 2007 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is an ortholog of human CTDP1 (CTD phosphatase subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36F2.6 | |||||||
| Corresponding_CDS_history | F36F2.6:wp151 | ||||||||
| Corresponding_transcript | F36F2.6.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf664653 | ||||||||
| WBsf220017 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116945 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116715 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012867 | ||||||||
| Expr1034150 | |||||||||
| Expr1150376 | |||||||||
| Expr2011745 | |||||||||
| Expr2029983 | |||||||||
| Drives_construct | WBCnstr00032153 | ||||||||
| Construct_product | WBCnstr00032153 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction | WBInteraction000571614 | ||||||||
| WBInteraction000575384 | |||||||||
| WBInteraction000579793 | |||||||||
| WBInteraction000584987 | |||||||||
| Map_info | Map | I | Position | 3.3674 | Error | 0.001785 | |||
| Positive | Positive_clone | F36F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031595 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044000 | |||||||||
| WBPaper00053836 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
