WormBase Tree Display for Gene: WBGene00007953
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| WBGene00007953 | SMap | S_parent | Sequence | C35A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | hda-11 | Person_evidence | WBPerson260 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | C35A5.9 | ||||||||
| Molecular_name | C35A5.9 | ||||||||
| C35A5.9.1 | |||||||||
| CE41555 | |||||||||
| Other_name | hdac-11 | Person_evidence | WBPerson2136 | ||||||
| CELE_C35A5.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | hda-11 | ||||||||
| DB_info | Database | AceView | gene | 5L7 | |||||
| WormQTL | gene | WBGene00007953 | |||||||
| WormFlux | gene | WBGene00007953 | |||||||
| NDB | locus_tag | CELE_C35A5.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007953|UniProtKB=Q18477 | |||||||
| family | PTHR43497 | ||||||||
| NCBI | gene | 183226 | |||||||
| RefSeq | protein | NM_073298.4 | |||||||
| TREEFAM | TREEFAM_ID | TF106176 | |||||||
| TrEMBL | UniProtAcc | Q18477 | |||||||
| UniProt_GCRP | UniProtAcc | Q18477 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Nov 2009 10:01:13 | WBPerson9133 | Name_change | CGC_name | hdac-11 | ||||
| 3 | 12 Apr 2012 16:15:43 | WBPerson2970 | Name_change | CGC_name | hda-11 | ||||
| Other_name | hdac-11 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hda | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00061347 | ||||||||
| 00061348 | |||||||||
| 00061349 | |||||||||
| 00061350 | |||||||||
| 00061351 | |||||||||
| 00061352 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00001834 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001835 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001836 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001837 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001838 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009663 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018319 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00219378 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable histone deacetylase activity. Predicted to be involved in chromatin remodeling. Predicted to be part of histone deacetylase complex. Is an ortholog of human HDAC11 (histone deacetylase 11). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C35A5.9 | |||||||
| Corresponding_CDS_history | C35A5.9:wp137 | ||||||||
| C35A5.9:wp182 | |||||||||
| Corresponding_transcript | C35A5.9.1 | ||||||||
| Other_sequence | JI172012.1 | ||||||||
| JI475085.1 | |||||||||
| Tcol_isotig24726 | |||||||||
| Tcol_isotig02158 | |||||||||
| Tcol_isotig02159 | |||||||||
| CBC09224_1 | |||||||||
| Tcir_isotig14028 | |||||||||
| BXC06965_1 | |||||||||
| Associated_feature | WBsf647167 | ||||||||
| WBsf647168 | |||||||||
| WBsf232391 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011644 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091924 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041953 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064108 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017520 | ||||||||
| Expr1145962 | |||||||||
| Expr2012383 | |||||||||
| Expr2030619 | |||||||||
| Drives_construct | WBCnstr00033355 | ||||||||
| Construct_product | WBCnstr00033355 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | V | Position | 2.57121 | Error | 0.000316 | |||
| Positive | Positive_clone | C35A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005736 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
