WormBase Tree Display for Gene: WBGene00007805
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WBGene00007805 | SMap | S_parent | Sequence | C29F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | clec-231 | Person_evidence | WBPerson2531 | |||
Sequence_name | C29F3.4 | ||||||
Molecular_name | C29F3.4 | ||||||
C29F3.4.1 | |||||||
CE34525 | |||||||
Other_name | CELE_C29F3.4 | Accession_evidence | NDB | BX284605 | |||
Public_name | clec-231 | ||||||
DB_info | Database | AceView | gene | 5P830 | |||
WormQTL | gene | WBGene00007805 | |||||
WormFlux | gene | WBGene00007805 | |||||
NDB | locus_tag | CELE_C29F3.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007805|UniProtKB=O17613 | |||||
family | PTHR23124 | ||||||
NCBI | gene | 183005 | |||||
RefSeq | protein | NM_074407.3 | |||||
TREEFAM | TREEFAM_ID | TF322919 | |||||
TrEMBL | UniProtAcc | O17613 | |||||
UniProt_GCRP | UniProtAcc | O17613 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (27) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00081421 | Caenorhabditis remanei | From_analysis | TreeFam | |||
CSP38.g19404 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||
chrV_pilon.g16792 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog | WBGene00007806 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00021949 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00044264 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00010355 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00044086 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Enriched in arcade cell based on single-cell RNA-seq studies. Is affected by several genes including clk-1; mdt-15; and dpy-21 based on microarray; tiling array; and RNA-seq studies. Is affected by multi-walled carbon nanotube and Colistin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C29F3.4 | |||||
Corresponding_CDS_history | C29F3.4:wp105 | ||||||
Corresponding_transcript | C29F3.4.1 | ||||||
Associated_feature | WBsf653447 | ||||||
Experimental_info | RNAi_result | WBRNAi00041463 | Inferred_automatically | RNAi_primary | |||
WBRNAi00029317 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011333 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1025313 | ||||||
Expr1145492 | |||||||
Expr2010138 | |||||||
Expr2028379 | |||||||
Drives_construct | WBCnstr00033470 | ||||||
Construct_product | WBCnstr00033470 | ||||||
Microarray_results (14) | |||||||
Expression_cluster (22) | |||||||
Interaction (361) | |||||||
Map_info | Map | V | Position | 7.88433 | Error | 0.004577 | |
Positive | Positive_clone | C29F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |