WormBase Tree Display for Gene: WBGene00021949

WBGene00021949 SMap: S_parent: Sequence: Y55F3C
  Identity: Version: 2
    Name: CGC_name: clec-164 Person_evidence: WBPerson2531
      Sequence_name: Y55F3C.5
      Molecular_name: Y55F3C.5
        Y55F3C.5.1
        CE48314
      Other_name: Y55F3C.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y55F3C.5 Accession_evidence: NDB BX284604
      Public_name: clec-164
    DB_info: Database: AceView gene 4B469
        WormQTL gene WBGene00021949
        WormFlux gene WBGene00021949
        NDB locus_tag CELE_Y55F3C.5
        Panther gene CAEEL|WormBase=WBGene00021949|UniProtKB=Q95XW1
          family PTHR47753
        NCBI gene 190323
        RefSeq protein NM_067574.3
        TREEFAM TREEFAM_ID TF322919
        TrEMBL UniProtAcc Q95XW1
        UniProt_GCRP UniProtAcc Q95XW1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 09 Oct 2007 15:40:27 WBPerson2970 Name_change: CGC_name: clec-164
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (40)
    RNASeq_FPKM (74)
    Ortholog (12)
    Paralog: WBGene00007805 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007806 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00010355 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044264 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044086 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in amphid sheath cell; ciliated neurons; and in male based on RNA-seq studies. Is affected by several genes including aak-2; drh-3; and smg-2 based on tiling array; microarray; and RNA-seq studies. Is affected by fluoranthene based on microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y55F3C.5
    Corresponding_CDS_history: Y55F3C.5:wp237
    Corresponding_transcript: Y55F3C.5.1
    Associated_feature: WBsf718034
      WBsf995246
      WBsf995247
      WBsf995248
      WBsf1016600
      WBsf1016601
      WBsf227875
  Experimental_info: RNAi_result: WBRNAi00057557 Inferred_automatically: RNAi_primary
      WBRNAi00021055 Inferred_automatically: RNAi_primary
      WBRNAi00037530 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016716
      Expr1160990
      Expr2010088
      Expr2028330
    Drives_construct: WBCnstr00024395
    Construct_product: WBCnstr00024395
    Microarray_results (15)
    Expression_cluster (35)
    Interaction (24)
  Map_info: Map: IV Position: -23.6159 Error: 0.011696
    Positive: Positive_clone: Y55F3C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene