WormBase Tree Display for Gene: WBGene00007670
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| WBGene00007670 | SMap | S_parent | Sequence | C18D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | stg-1 | Person_evidence | WBPerson404 | |||||
| Sequence_name | C18D1.4 | ||||||||
| Molecular_name | C18D1.4 | ||||||||
| C18D1.4.1 | |||||||||
| CE34701 | |||||||||
| Other_name | CELE_C18D1.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | stg-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Jul 2006 13:27:55 | WBPerson2970 | Name_change | CGC_name | stg-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stg | ||||||||
| Allele (78) | |||||||||
| Strain | WBStrain00032987 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00000995 | ||||||||
| WBGene00017400 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | stg-1 encodes, along with stg-2, one of two C. elegans TARPs (transmembrane AMPAR regulatory proteins); STG-1 is similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin; MGI:1316660). | Paper_evidence | WBPaper00027728 | |||||
| WBPaper00032216 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 13 Oct 2012 00:00:00 | ||||||||
| Automated_description | Enables channel regulator activity. Involved in positive regulation of glutamatergic synaptic transmission. Predicted to be located in postsynaptic density membrane. Predicted to be part of AMPA glutamate receptor complex. Expressed in neurons. Human ortholog(s) of this gene implicated in several diseases, including acute myocardial infarction; autosomal dominant intellectual developmental disorder 10; and childhood absence epilepsy. Is an ortholog of several human genes including CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2); CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3); and CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1825 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1407) | ||||
| DOID:9408 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1408) | ||||||
| DOID:4448 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1407) | ||||||
| DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13628) | ||||||
| DOID:0070040 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1406) | ||||||
| Molecular_info | Corresponding_CDS | C18D1.4 | |||||||
| Corresponding_transcript | C18D1.4.1 | ||||||||
| Other_sequence | CJC18063_1 | ||||||||
| CSC00147_1 | |||||||||
| FD517017.1 | |||||||||
| JI180485.1 | |||||||||
| JI477928.1 | |||||||||
| Associated_feature | WBsf650481 | ||||||||
| WBsf666002 | |||||||||
| WBsf989225 | |||||||||
| Experimental_info | Expr_pattern | Expr3933 | |||||||
| Expr3934 | |||||||||
| Expr8362 | |||||||||
| Expr8363 | |||||||||
| Expr1025900 | |||||||||
| Expr1144966 | |||||||||
| Expr2016960 | |||||||||
| Expr2035108 | |||||||||
| Drives_construct | WBCnstr00011757 | ||||||||
| WBCnstr00013283 | |||||||||
| WBCnstr00033565 | |||||||||
| Construct_product | WBCnstr00013284 | ||||||||
| WBCnstr00018419 | |||||||||
| WBCnstr00018420 | |||||||||
| WBCnstr00018421 | |||||||||
| WBCnstr00033565 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (64) | |||||||||
| Interaction | WBInteraction000162180 | ||||||||
| WBInteraction000162181 | |||||||||
| WBInteraction000174106 | |||||||||
| WBInteraction000174107 | |||||||||
| WBInteraction000339832 | |||||||||
| WBInteraction000550431 | |||||||||
| WBInteraction000556747 | |||||||||
| WBInteraction000561010 | |||||||||
| Map_info | Map | II | Position | 1.86525 | Error | 0.003944 | |||
| Positive | Positive_clone | C18D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027727 | ||||||||
| WBPaper00027728 | |||||||||
| WBPaper00032216 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041519 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
