WormBase Tree Display for Gene: WBGene00007262
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WBGene00007262 | SMap | S_parent | Sequence | C02D4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | jud-4 | Paper_evidence | WBPaper00031371 | |||||
Person_evidence | WBPerson360 | ||||||||
Sequence_name | C02D4.1 | ||||||||
Molecular_name | C02D4.1 | ||||||||
C02D4.1.1 | |||||||||
CE44488 | |||||||||
Other_name | CELE_C02D4.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | jud-4 | ||||||||
DB_info | Database | AceView | gene | XP903 | |||||
WormQTL | gene | WBGene00007262 | |||||||
WormFlux | gene | WBGene00007262 | |||||||
NDB | locus_tag | CELE_C02D4.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007262|UniProtKB=Q6LA91 | |||||||
family | PTHR21593 | ||||||||
NCBI | gene | 182109 | |||||||
RefSeq | protein | NM_078133.6 | |||||||
TREEFAM | TREEFAM_ID | TF316270 | |||||||
TrEMBL | UniProtAcc | Q6LA91 | |||||||
UniProt_GCRP | UniProtAcc | Q6LA91 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 15 Jan 2008 10:52:23 | WBPerson2970 | Name_change | CGC_name | jud-4 | ||||
3 | 01 Nov 2011 16:29:25 | WBPerson2970 | Event | Acquires_merge | WBGene00077533 | ||||
Acquires_merge | WBGene00077533 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | jud | ||||||||
Allele (43) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (25) | |||||||||
Paralog (38) | |||||||||
Structured_description | Concise_description | jud-4 encodes an unfamiliar protein, putatively secreted, that isrequired both for normal sensitivity to ethanol and for survival afterfreezing and thawing; JUD-4 is expressed in hypodermis and vulvalmuscles; JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacksobvious orthologies to non-nematode proteins; JUD-4's C-terminal domainhas possible similarity to F40E10.5, and to proteins such as human HOMER1; jud-4(ys18) mutants show delayed sensitivity to ethanol levelsthat rapidly paralyze normal worms, but do not survive freezing andrethawing as does wild-type; JUD-4 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031371 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 04 Feb 2008 00:00:00 | ||||||||
Automated_description | Expressed in hypodermis and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C02D4.1 | |||||||
Corresponding_CDS_history | C02D4.1:wp179 | ||||||||
C02D4.1:wp211 | |||||||||
Corresponding_transcript | C02D4.1.1 | ||||||||
Other_sequence | CJC12505_1 | ||||||||
Acan_isotig16488 | |||||||||
Associated_feature | WBsf648791 | ||||||||
WBsf648792 | |||||||||
WBsf648793 | |||||||||
WBsf663626 | |||||||||
WBsf1008162 | |||||||||
WBsf236757 | |||||||||
Experimental_info | RNAi_result | WBRNAi00039410 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009984 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7885 | ||||||||
Expr1028098 | |||||||||
Expr1143526 | |||||||||
Expr2012897 | |||||||||
Expr2031131 | |||||||||
Drives_construct | WBCnstr00012968 | ||||||||
WBCnstr00033875 | |||||||||
Construct_product | WBCnstr00012968 | ||||||||
WBCnstr00033875 | |||||||||
Microarray_results (23) | |||||||||
Expression_cluster (157) | |||||||||
Interaction | WBInteraction000292619 | ||||||||
WBInteraction000300241 | |||||||||
WBInteraction000365446 | |||||||||
Map_info | Map | X | Position | 22.331 | Error | 0.007282 | |||
Positive | Positive_clone | C02D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Pos_neg_data | 10902 | |||||||
10903 | |||||||||
10904 | |||||||||
Reference | WBPaper00031371 | ||||||||
WBPaper00033519 | |||||||||
WBPaper00037313 | |||||||||
Remark | WBGene00077533 created in error and merged into this gene. | Curator_confirmed | WBPerson2970 | ||||||
Method | Gene |