WormBase Tree Display for Sequence: C02D4
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| C02D4 | DNA | C02D4 | 28611 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (17) | ||||
| CDS_child (126) | ||||||
| Transcript (23) | ||||||
| PCR_product | cenix:118-h12 | 10607 | 12124 | |||
| cenix:92-h6 | 5861 | 6564 | ||||
| mv_C02D4.1 | 5573 | 6512 | ||||
| mv_C02D4.2 | 7707 | 12801 | ||||
| p_C02D4.2a_93 | 12803 | 14802 | ||||
| sjj_C02D4.1 | 5337 | 6927 | ||||
| sjj_C02D4.2 | 7466 | 9696 | ||||
| Allele (456) | ||||||
| Oligo_set | Aff_C02D4.1 | 5725 | 6514 | |||
| Aff_C02D4.2 | 9565 | 7705 | ||||
| Feature_object (155) | ||||||
| Feature_data | C02D4:TranscriptionallyActiveRegion | 1 | 28611 | |||
| C02D4:ChIPSeqTF | 1 | 28611 | ||||
| C02D4:TRF | 1 | 28611 | ||||
| C02D4:Dust | 1 | 28611 | ||||
| C02D4:inverted | 1 | 28611 | ||||
| Homol_data (18) | ||||||
| Structure | From | Source | CHROMOSOME_X | |||
| Overlap_right | Y15E3A | 28515 | ||||
| Overlap_left | F46F2 | |||||
| Clone_right_end | F46F2 | 101 | ||||
| C02D4 | 28611 | |||||
| DB_info | Database | EMBL | NDB_AC | Z81031 | ||
| NDB_SV | Z81031.1 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Baynes C | ||||
| From_laboratory | HX | |||||
| Date_directory | 961114 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | C02D4 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 8f3f628cf72f81c253ccff085c70c279 | ||||
| Status | Finished | 14 Nov 1996 00:00:00 | ||||
| Submitted | 21 Oct 1996 00:00:00 | |||||
| Annotated | 05 May 1997 00:00:00 | |||||
| Map | Sequence-X | Ends | Left | 8315 | ||
| Right | 8336 | |||||
| Interpolated_map_position | X | 22.3582 | ||||
| Assembly_tags | Finished Left | 1 | 1 | |||
| annotation | 241 | 243 | This appears to be a compression of 3 Gs to 2. All reads here are on the + strand, and most show 2 Gs with spacing that suggests a compression. Many terms across here (Taq, Tabor and TaqFS) still only show 2 Gs and do not fully expand compression. 1 read (Tabor) shows 3 clear Gs. | |||
| 13550 | 13550 | This read differs from other 2 reads T > C mutation | ||||
| 25176 | 25178 | single read has TCT | ||||
| 10511 | 10509 | single read has TCT | ||||
| Clone right end | 98 | 101 | F46f2 | |||
| 28611 | 28611 | right end of C02D4 | ||||
| Finished Right | 43278 | 43278 | ||||
| 28611 | 28611 | |||||
| Method | Genomic_canonical |
