WormBase Tree Display for Gene: WBGene00006965
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WBGene00006965 | SMap | S_parent | Sequence | F54F7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | xtr-1 | Person_evidence | WBPerson349 | |||||
Sequence_name | F54F7.4 | ||||||||
Molecular_name | F54F7.4 | ||||||||
F54F7.4.1 | |||||||||
CE51247 | |||||||||
Other_name | CELE_F54F7.4 | Accession_evidence | NDB | BX284606 | |||||
Public_name | xtr-1 | ||||||||
DB_info | Database | AceView | gene | XM471 | |||||
WormQTL | gene | WBGene00006965 | |||||||
WormFlux | gene | WBGene00006965 | |||||||
NDB | locus_tag | CELE_F54F7.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006965|UniProtKB=Q20791 | |||||||
family | PTHR39365 | ||||||||
NCBI | gene | 192057 | |||||||
RefSeq | protein | NM_001322634.2 | |||||||
TrEMBL | UniProtAcc | Q20791 | |||||||
UniProt_GCRP | UniProtAcc | Q20791 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 18 Feb 2016 15:17:05 | WBPerson1983 | Event | Split_into | WBGene00269392 | ||||
Split_into | WBGene00269392 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | xtr | ||||||||
Allele (25) | |||||||||
Legacy_information | [Kuwabara PE] No mutants known. Sequence similarity to C-terminal regulatory region of TRA-2. Predicted gene F54F7.4 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00069145 | ||||||||
00069146 | |||||||||
00069147 | |||||||||
00115140 | |||||||||
00115141 | |||||||||
00115142 | |||||||||
Ortholog (13) | |||||||||
Paralog | WBGene00006605 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00044213 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | xtr-1 encodes a protein with similarity to TRA-2A and TRA-2B in a region known as the MX region, hypothesized to be a protein-protein interaction domain involved in negatively regulating tra-2 activity in the germ line. | Paper_evidence | WBPaper00003323 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 31 Mar 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54F7.4 | |||||||
Corresponding_CDS_history | F54F7.4:wp252 | ||||||||
Corresponding_transcript | F54F7.4.1 | ||||||||
Other_sequence | CRC10370_1 | ||||||||
CR05644 | |||||||||
Experimental_info | RNAi_result | WBRNAi00048381 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015661 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028828 | ||||||||
Expr1152171 | |||||||||
Expr2018112 | |||||||||
Expr2036250 | |||||||||
Drives_construct | WBCnstr00034065 | ||||||||
Construct_product | WBCnstr00034065 | ||||||||
Microarray_results (16) | |||||||||
Expression_cluster (145) | |||||||||
Map_info | Map | X | Position | 6.73782 | |||||
Positive | Positive_clone | F54F7 | Author_evidence | Kuwabara PE | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003323 | ||||||||
Remark | Following advice from [Hodgkin J], the trx gene class was renamed to xtr. Hence this gene used to be called trx-1. [krb 020614] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |