WormBase Tree Display for Gene: WBGene00006928
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WBGene00006928 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | vit-4 | Person_evidence | WBPerson71 | |||||
Sequence_name | F59D8.2 | ||||||||
Molecular_name | F59D8.2 | ||||||||
F59D8.2.1 | |||||||||
CE26817 | |||||||||
Other_name | F59D8.a | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
F59D8.b | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_F59D8.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | vit-4 | ||||||||
DB_info | Database | AceView | gene | XE176 | |||||
WormQTL | gene | WBGene00006928 | |||||||
WormFlux | gene | WBGene00006928 | |||||||
NDB | locus_tag | CELE_F59D8.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006928|UniProtKB=P18947 | |||||||
family | PTHR23345 | ||||||||
NCBI | gene | 180646 | |||||||
RefSeq | protein | NM_076211.8 | |||||||
SwissProt | UniProtAcc | P18947 | |||||||
TREEFAM | TREEFAM_ID | TF332911 | |||||||
UniProt_GCRP | UniProtAcc | P18947 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | vit | ||||||||
Allele (36) | |||||||||
Legacy_information | Structural gene for vitellogenin yp170A; adjacent to vit-3. | ||||||||
[C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL] | |||||||||
Strain | WBStrain00032883 | ||||||||
WBStrain00047209 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00039636 | ||||||||
00039637 | |||||||||
00039638 | |||||||||
00039639 | |||||||||
00115040 | |||||||||
00115041 | |||||||||
Ortholog (92) | |||||||||
Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F59D8.2 | |||||||
Corresponding_transcript | F59D8.2.1 | ||||||||
Other_sequence (125) | |||||||||
Associated_feature | WBsf1004666 | ||||||||
WBsf237187 | |||||||||
Experimental_info | RNAi_result (42) | ||||||||
Expr_pattern | Expr16163 | ||||||||
Expr1152928 | |||||||||
Expr2036139 | |||||||||
Drives_construct | WBCnstr00034092 | ||||||||
Construct_product | WBCnstr00034092 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (389) | |||||||||
Interaction (61) | |||||||||
Map_info | Map | X | Position | -10.0749 | Error | 0.015222 | |||
Positive | Positive_clone | F59D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
YOLK3-8 | |||||||||
Pseudo_map_position | |||||||||
Reference (26) | |||||||||
Remark | F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |