WormBase Tree Display for Gene: WBGene00006924
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| WBGene00006924 | Evidence | Person_evidence | WBPerson1159 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F56D12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | vig-1 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F56D12.5 | ||||||||
| Molecular_name | F56D12.5 | ||||||||
| F56D12.5.1 | |||||||||
| CE11254 | |||||||||
| Other_name | CELE_F56D12.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | vig-1 | ||||||||
| DB_info | Database | AceView | gene | 2B613 | |||||
| WormQTL | gene | WBGene00006924 | |||||||
| WormFlux | gene | WBGene00006924 | |||||||
| NDB | locus_tag | CELE_F56D12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006924|UniProtKB=H2KYR1 | |||||||
| family | PTHR12299 | ||||||||
| NCBI | gene | 173512 | |||||||
| RefSeq | protein | NM_001381327.3 | |||||||
| TrEMBL | UniProtAcc | H2KYR1 | |||||||
| UniProt_GCRP | UniProtAcc | H2KYR1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vig | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00032618 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021826 | ||||||||
| 00021827 | |||||||||
| 00021828 | |||||||||
| 00021829 | |||||||||
| 00021830 | |||||||||
| 00115033 | |||||||||
| Ortholog (31) | |||||||||
| Structured_description | Concise_description | vig-1 encodes a predicted RNA-binding protein orthologous to Drosophila VIG (Vasa Intronic Gene); vig-1 activity is required for proper function of the let-7 miRNA in vivo and thus, for regulating the transition from late larval to adult cell fates; VIG-1 is a component of the 250 kDa RNA-induced silencing complex (RISC) complex and co-immunoprecipates with both TSN-1, the C. elegans Tudor-SN ortholog, and the let-7 miRNA. | Paper_evidence | WBPaper00006077 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Part of RISC complex. Expressed in neurons. Is an ortholog of human HABP4 (hyaluronan binding protein 4) and SERBP1 (SERPINE1 mRNA binding protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56D12.5 | |||||||
| Corresponding_CDS_history | F56D12.5b:wp93 | ||||||||
| F56D12.5b:wp274 | |||||||||
| Corresponding_transcript | F56D12.5.1 | ||||||||
| Other_sequence (111) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00077636 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076489 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048693 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015814 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022565 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113529 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032954 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111801 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001306 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1845 | ||||||||
| Expr6221 | |||||||||
| Expr8374 | |||||||||
| Expr8375 | |||||||||
| Expr13928 | |||||||||
| Expr1013083 | |||||||||
| Expr1032941 | |||||||||
| Expr1152448 | |||||||||
| Expr2017998 | |||||||||
| Expr2036134 | |||||||||
| Drives_construct | WBCnstr00003445 | ||||||||
| WBCnstr00013289 | |||||||||
| Construct_product | WBCnstr00013289 | ||||||||
| Antibody | WBAntibody00001453 | ||||||||
| WBAntibody00001468 | |||||||||
| WBAntibody00001636 | |||||||||
| WBAntibody00002676 | |||||||||
| WBAntibody00002739 | |||||||||
| WBAntibody00002747 | |||||||||
| WBAntibody00002854 | |||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction (116) | |||||||||
| WBProcess | WBbiopr:00000057 | ||||||||
| Map_info | Map | II | Position | -15.4961 | Error | 0.004871 | |||
| Positive | Positive_clone | F56D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (25) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
