WormBase Tree Display for Gene: WBGene00006864
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| WBGene00006864 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | npr-16 | Person_evidence | WBPerson42 | |||||
| WBPerson261 | |||||||||
| Sequence_name | F56B6.5 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | uvt-6 | Person_evidence | WBPerson71 | ||||||
| CELE_F56B6.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | npr-16 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00006864 | |||||
| WormFlux | gene | WBGene00006864 | |||||||
| NDB | locus_tag | CELE_F56B6.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006864|UniProtKB=A0A3B1DQQ4 | |||||||
| family | PTHR24229 | ||||||||
| NCBI | gene | 180643 | |||||||
| RefSeq | protein | NM_001047793.6 | |||||||
| NM_001368498.3 | |||||||||
| NM_001047794.5 | |||||||||
| NM_001368499.4 | |||||||||
| TrEMBL | UniProtAcc | A0A3B1E8V2 | |||||||
| Q22995 | |||||||||
| A0A3B1DQQ4 | |||||||||
| Q2V4S5 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3B1DQQ4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 26 Sep 2008 15:49:39 | WBPerson2970 | Name_change | CGC_name | npr-10 | ||||
| 3 | 08 May 2009 14:29:51 | WBPerson9133 | Name_change | CGC_name | npr-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npr | ||||||||
| Allele (174) | |||||||||
| Legacy_information | are transcript present in adult hermaphrodites. | ||||||||
| [C.elegansII] NMK. Rare transcript present only in adult hermaphrodites. [Heine and Blumenthal 1986]uvt-7X-12.7NMK. 2.3 kb transcript present in embryos, adult hermaphrodites. [Heine and Blumenthal 1986] | |||||||||
| Strain | WBStrain00032064 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00013974 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00020086 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020319 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00011372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018886 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018089 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015559 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00008065 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013782 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016265 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | npr-16 encodes a G protein-coupled receptor that is most similar to the mammalian somatostatin receptors; npr-16 was first identified in molecular analyses of gene products linked to the vitellogenin (vit) loci on the X chromosome; npr-16 mRNA is expressed weakly in adult hermaphrodites. | Paper_evidence | WBPaper00000873 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Sep 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in neuron projection. Expressed in anal depressor muscle; neurons; ventral nerve cord; and vm1. Is an ortholog of human SSTR3 (somatostatin receptor 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56B6.5a | |||||||
| F56B6.5b | |||||||||
| F56B6.5c | |||||||||
| F56B6.5d | |||||||||
| Corresponding_CDS_history | F56B6.5:wp151 | ||||||||
| Corresponding_transcript | F56B6.5a.1 | ||||||||
| F56B6.5a.2 | |||||||||
| F56B6.5b.1 | |||||||||
| F56B6.5c.1 | |||||||||
| F56B6.5d.1 | |||||||||
| Other_sequence | EY458713.1 | ||||||||
| EY469600.1 | |||||||||
| JI475797.1 | |||||||||
| ACC28381_1 | |||||||||
| FC545242.1 | |||||||||
| Acan_isotig09081 | |||||||||
| JI172620.1 | |||||||||
| HC06054 | |||||||||
| Dviv_isotig18407 | |||||||||
| Dviv_isotig18406 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00023493 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015787 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001919 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072214 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048647 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1242 | ||||||||
| Expr3900 | |||||||||
| Expr1013815 | |||||||||
| Expr1152409 | |||||||||
| Expr2014401 | |||||||||
| Expr2032642 | |||||||||
| Drives_construct | WBCnstr00011733 | ||||||||
| WBCnstr00037881 | |||||||||
| Construct_product | WBCnstr00037881 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction | WBInteraction000337355 | ||||||||
| WBInteraction000502331 | |||||||||
| Map_info | Map | X | Position | -10.2275 | Error | 0.029069 | |||
| Positive | Positive_clone | F56B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5193 | |||||||
| 4357 | |||||||||
| 5042 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000873 | ||||||||
| WBPaper00025141 | |||||||||
| WBPaper00027104 | |||||||||
| WBPaper00032196 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00063598 | |||||||||
| WBPaper00064652 | |||||||||
| Remark | Map X | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| this gene was mistakenly assigned the name npr-10 | |||||||||
| Method | Gene |
