WormBase Tree Display for Gene: WBGene00006467
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WBGene00006467 | SMap | S_parent | Sequence | C01B7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||
Name | CGC_name | magu-2 | Person_evidence | WBPerson260 | |||
Sequence_name | C01B7.4 | ||||||
Molecular_name | C01B7.4a | ||||||
C01B7.4a.1 | |||||||
CE52786 | |||||||
C01B7.4b | |||||||
CE06728 | |||||||
C01B7.4b.1 | |||||||
Other_name | tag-117 | Person_evidence | WBPerson51134 | ||||
WBPerson21950 | |||||||
CELE_C01B7.4 | Accession_evidence | NDB | BX284605 | ||||
Public_name | magu-2 | ||||||
DB_info | Database | AceView | gene | 5J272 | |||
WormQTL | gene | WBGene00006467 | |||||
WormFlux | gene | WBGene00006467 | |||||
NDB | locus_tag | CELE_C01B7.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006467|UniProtKB=A0A3B1DQX2 | |||||
family | PTHR23122 | ||||||
NCBI | gene | 3565703 | |||||
RefSeq | protein | NM_001368460.3 | |||||
NM_001392569.1 | |||||||
TrEMBL | UniProtAcc | A0A3B1DQX2 | |||||
Q17549 | |||||||
UniProt_GCRP | UniProtAcc | A0A3B1DQX2 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (4) | ||||||
Acquires_merge | WBGene00015276 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | magu | ||||||
Allele (111) | |||||||
Strain | WBStrain00001351 | ||||||
WBStrain00031792 | |||||||
WBStrain00035753 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (38) | |||||||
Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021914 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | magu-2 encodes a protein with similarity to the MAGUK (membrane-associated guanylate kinase) family of proteins; loss of magu-2 activity in large-scale RNAi screens can result in embryonic lethality with low, reproducible chromosome segregation defects; magu-2 exhibits genetic interactions with sem-5 and glp-1. | Paper_evidence | WBPaper00025054 | |||
WBPaper00031036 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 06 Jan 2011 00:00:00 | ||||||
Automated_description | Predicted to be involved in several processes, including establishment or maintenance of cell polarity; morphogenesis of an epithelial sheet; and protein localization to plasma membrane. Predicted to be located in adherens junction and plasma membrane. Expressed in head; hypodermis; and pharyngeal muscle cell. Is an ortholog of human PALS1 (protein associated with LIN7 1, MAGUK p55 family member). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS (2) | ||||||
Corresponding_CDS_history | C01B7.4:wp267 | ||||||
Corresponding_transcript | C01B7.4a.1 | ||||||
C01B7.4b.1 | |||||||
Other_sequence (25) | |||||||
Associated_feature | WBsf652873 | ||||||
WBsf717246 | |||||||
WBsf718362 | |||||||
WBsf718363 | |||||||
WBsf1000758 | |||||||
WBsf1000759 | |||||||
WBsf1000760 | |||||||
WBsf1000761 | |||||||
WBsf1020096 | |||||||
WBsf1020097 | |||||||
Experimental_info | RNAi_result (10) | ||||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00002244 | ||||||
WBCnstr00028966 | |||||||
WBCnstr00041995 | |||||||
Construct_product | WBCnstr00028966 | ||||||
WBCnstr00041995 | |||||||
Regulate_expr_cluster | WBPaper00062554:MAGU-2_interacting | ||||||
Microarray_results (36) | |||||||
Expression_cluster (237) | |||||||
Interaction (65) | |||||||
Map_info | Map | V | Position | 1.61461 | Error | 0.004441 | |
Positive | Positive_clone | C01B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4356 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00031333 | ||||||
WBPaper00035956 | |||||||
WBPaper00038491 | |||||||
WBPaper00051918 | |||||||
WBPaper00055090 | |||||||
WBPaper00058545 | |||||||
WBPaper00059621 | |||||||
WBPaper00062554 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Moved tag-117 from magu-1 to magu-2 where it belongs, seems like a very old (2013) misassignment. | |||||||
Method | Gene |