WormBase Tree Display for Gene: WBGene00006460
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| WBGene00006460 | SMap | S_parent | Sequence | F25D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ppm-1.A | Laboratory_evidence | GNW | |||||
| Sequence_name | F25D1.1 | ||||||||
| Molecular_name | F25D1.1a | ||||||||
| F25D1.1a.1 | |||||||||
| CE05722 | |||||||||
| F25D1.1b | |||||||||
| CE36134 | |||||||||
| F25D1.1c | |||||||||
| CE41642 | |||||||||
| F25D1.1b.1 | |||||||||
| F25D1.1c.1 | |||||||||
| Other_name | tag-93 | Person_evidence | WBPerson201 | ||||||
| ppm-1 | |||||||||
| CELE_F25D1.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | ppm-1.A | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 10 Jun 2011 14:55:22 | WBPerson2970 | Name_change | CGC_name | ppm-1 | ||||
| Other_name | tag-93 | ||||||||
| 3 | 24 May 2018 17:10:07 | WBPerson1983 | Name_change | CGC_name | ppm-1.A | ||||
| Other_name | ppm-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ppm | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00002924 | ||||||||
| WBStrain00035646 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00001412 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00018362 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011953 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021856 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016580 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009354 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006524 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in negative regulation of stress-activated MAPK cascade. Predicted to be located in cytosol and nucleus. Is an ortholog of human PPM1A (protein phosphatase, Mg2+/Mn2+ dependent 1A) and PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25D1.1a | |||||||
| F25D1.1b | |||||||||
| F25D1.1c | |||||||||
| Corresponding_transcript | F25D1.1a.1 | ||||||||
| F25D1.1b.1 | |||||||||
| F25D1.1c.1 | |||||||||
| Other_sequence (65) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031362 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013860 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5853 | ||||||||
| Expr16044 | |||||||||
| Expr16045 | |||||||||
| Expr1015972 | |||||||||
| Expr1032631 | |||||||||
| Expr1149403 | |||||||||
| Expr2015019 | |||||||||
| Expr2033254 | |||||||||
| Drives_construct | WBCnstr00003436 | ||||||||
| WBCnstr00014775 | |||||||||
| WBCnstr00014776 | |||||||||
| WBCnstr00014777 | |||||||||
| WBCnstr00037902 | |||||||||
| WBCnstr00042712 | |||||||||
| Construct_product (13) | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (219) | |||||||||
| Map_info | Map | V | Position | 2.57199 | Error | 0.001782 | |||
| Positive | Positive_clone | F25D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5081 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028564 | ||||||||
| WBPaper00037171 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039219 | |||||||||
| WBPaper00040220 | |||||||||
| WBPaper00041279 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00045901 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
