WormBase Tree Display for Gene: WBGene00006363
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WBGene00006363 | Evidence | Paper_evidence | WBPaper00005543 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F35D2 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | syd-1 | Person_evidence | WBPerson105 | |||||
WBPerson293 | |||||||||
Sequence_name | F35D2.5 | ||||||||
Molecular_name (7) | |||||||||
Other_name | CELE_F35D2.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | syd-1 | ||||||||
DB_info | Database | AceView | gene | 2H876 | |||||
WormQTL | gene | WBGene00006363 | |||||||
WormFlux | gene | WBGene00006363 | |||||||
NDB | locus_tag | CELE_F35D2.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006363|UniProtKB=Q86NH1 | |||||||
family | PTHR46150 | ||||||||
NCBI | gene | 174230 | |||||||
RefSeq | protein | NM_001026975.4 | |||||||
NM_001383891.2 | |||||||||
SwissProt | UniProtAcc | Q86NH1 | |||||||
TREEFAM | TREEFAM_ID | TF323458 | |||||||
UniProt_GCRP | UniProtAcc | Q86NH1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | syd | ||||||||
Allele (120) | |||||||||
Strain | WBStrain00032087 | ||||||||
WBStrain00037967 | |||||||||
WBStrain00005369 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00015267 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
Structured_description | Concise_description | syd-1 encodes a protein that contains a Rho-GTPase-like activating domain as well as PDZ and C2 domains; during neuronal development, SYD-1 is required cell autonomously to positively regulate synaptogenesis; in regulating synapse development, SYD-1 functions as a positive regulator of SYD-2/liprin through direct interaction with ELKS-1, a pre-synaptic protein also required for synapse development; in turn, SYD-1 activity is regulated by RSY-1, a negative regulator of synaptogenesis, with which it also interacts physically; SYD-1 is expressed in neurons and localizes to presynaptic regions. | Paper_evidence | WBPaper00005543 | |||||
WBPaper00028808 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 08 Mar 2010 00:00:00 | ||||||||
Automated_description | Enables GTPase activator activity; Roundabout binding activity; and small GTPase binding activity. Involved in several processes, including axo-dendritic transport; cell projection organization; and locomotion. Located in presynaptic membrane. Expressed in nerve ring and neurons. Is an ortholog of human SYDE2 (synapse defective Rho GTPase homolog 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F35D2.5a | |||||||
F35D2.5c | |||||||||
Corresponding_CDS_history | F35D2.5:wp84 | ||||||||
F35D2.5:wp92 | |||||||||
F35D2.5b:wp93 | |||||||||
F35D2.5b:wp274 | |||||||||
Corresponding_transcript | F35D2.5a.1 | ||||||||
F35D2.5c.1 | |||||||||
F35D2.5c.2 | |||||||||
Other_sequence (15) | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00082910 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046330 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031774 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014326 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00000711 | ||||||||
WBCnstr00000728 | |||||||||
WBCnstr00010752 | |||||||||
WBCnstr00034391 | |||||||||
Construct_product | WBCnstr00000728 | ||||||||
WBCnstr00007017 | |||||||||
WBCnstr00010752 | |||||||||
WBCnstr00010753 | |||||||||
WBCnstr00012368 | |||||||||
WBCnstr00012375 | |||||||||
WBCnstr00018295 | |||||||||
WBCnstr00021865 | |||||||||
WBCnstr00034391 | |||||||||
WBCnstr00038079 | |||||||||
Antibody | WBAntibody00000569 | ||||||||
Microarray_results (33) | |||||||||
Expression_cluster (203) | |||||||||
Interaction (51) | |||||||||
Map_info | Map | II | Position | 0.504817 | Error | 4.2e-05 | |||
Positive | Positive_clone | F35D2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4188 | |||||||
4715 | |||||||||
4733 | |||||||||
5534 | |||||||||
Pseudo_map_position | |||||||||
Reference (52) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |