WormBase Tree Display for Gene: WBGene00005650
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| WBGene00005650 | SMap | S_parent | Sequence | F09C6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srp-9 | Person_evidence | WBPerson1460 | ||||||
| Sequence_name | F09C6.5 | |||||||||
| Molecular_name | F09C6.5 | |||||||||
| Other_name | CELE_F09C6.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srp-9 | |||||||||
| DB_info | Database | AceView | gene | 5R374 | ||||||
| WormQTL | gene | WBGene00005650 | ||||||||
| NDB | locus_tag | CELE_F09C6.5 | ||||||||
| NCBI | gene | 191961 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 04 Jan 2006 17:28:27 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srp | |||||||||
| Allele (70) | ||||||||||
| Strain | WBStrain00003394 | |||||||||
| WBStrain00031515 | ||||||||||
| WBStrain00031594 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00005648 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Is affected by several genes including daf-2; eat-2; and npr-1 based on microarray and RNA-seq studies. Is affected by six chemicals including aldicarb; methylmercuric chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F09C6.5:wp85 | ||||||||
| F09C6.5:wp153 | ||||||||||
| Corresponding_pseudogene | F09C6.5 | |||||||||
| Experimental_info | Expr_pattern | Expr5695 | ||||||||
| Drives_construct | WBCnstr00003863 | |||||||||
| Microarray_results | SMD_F09C6.5 | |||||||||
| 193892_at | ||||||||||
| A_12_P102933 | ||||||||||
| Aff_F09C6.5 | ||||||||||
| GPL3518_CE31848 | ||||||||||
| cea2.d.19376 | ||||||||||
| Expression_cluster (36) | ||||||||||
| Map_info | Map | V | Position | 11.2658 | Error | 0.008799 | ||||
| Positive | Positive_clone | F09C6 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Mapping_data | Multi_point | 4584 | ||||||||
| 4703 | ||||||||||
| 4704 | ||||||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00006476 | |||||||||
| WBPaper00026792 | ||||||||||
| Remark | Map V 25.8 | |||||||||
| In cgc5351 Ce-spn-7 has been mistakenly referred to as srp-9 [021127 ck1] | ||||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| Method | Gene |
