WormBase Tree Display for Gene: WBGene00005648
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| WBGene00005648 | SMap | S_parent | Sequence | F20D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srp-7 | Person_evidence | WBPerson1460 | |||||
| Sequence_name | F20D6.4 | ||||||||
| Molecular_name (14) | |||||||||
| Other_name | CELE_F20D6.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srp-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srp | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00031815 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005545 | ||||||||
| 00005546 | |||||||||
| 00010168 | |||||||||
| 00010169 | |||||||||
| 00105707 | |||||||||
| 00105793 | |||||||||
| 00113768 | |||||||||
| 00113769 | |||||||||
| Ortholog (135) | |||||||||
| Paralog | WBGene00005642 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005643 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005644 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005647 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005649 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005650 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Predicted to enable peptidase activity and serine-type endopeptidase inhibitor activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autosomal recessive nonsyndromic deafness 91; and thrombophilia (multiple). Is an ortholog of several human genes including SERPINB1 (serpin family B member 1); SERPINB8 (serpin family B member 8); and SERPINC1 (serpin family C member 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (13) | ||||||||
| Molecular_info | Corresponding_CDS | F20D6.4a | |||||||
| F20D6.4b | |||||||||
| F20D6.4c | |||||||||
| F20D6.4d | |||||||||
| Corresponding_CDS_history | F20D6.4:wp127 | ||||||||
| Corresponding_transcript | F20D6.4a.1 | ||||||||
| F20D6.4a.2 | |||||||||
| F20D6.4b.1 | |||||||||
| F20D6.4b.2 | |||||||||
| F20D6.4c.1 | |||||||||
| F20D6.4d.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf646989 | ||||||||
| WBsf646990 | |||||||||
| WBsf661472 | |||||||||
| WBsf232071 | |||||||||
| WBsf232072 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031178 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045113 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089046 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026188 | ||||||||
| Expr1032523 | |||||||||
| Expr1149064 | |||||||||
| Expr2016606 | |||||||||
| Expr2034797 | |||||||||
| Drives_construct | WBCnstr00034820 | ||||||||
| Construct_product | WBCnstr00034820 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | V | Position | 1.12322 | Error | 0.018855 | |||
| Positive | Positive_clone | F20D6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4960 | |||||||
| 4702 | |||||||||
| 4712 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005432 | ||||||||
| WBPaper00006476 | |||||||||
| WBPaper00010247 | |||||||||
| WBPaper00026792 | |||||||||
| WBPaper00026830 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | spn-1 has been mistakenly referred to as srp-7 [021127 ck1] | Paper_evidence | WBPaper00005351 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
