WormBase Tree Display for Gene: WBGene00004817
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| WBGene00004817 | Evidence | CGC_data_submission | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F13A7 | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | skr-11 | Person_evidence | WBPerson322 | ||||||
| Sequence_name | F13A7.9 | |||||||||
| Molecular_name | F13A7.9 | |||||||||
| Other_name | CELE_F13A7.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | skr-11 | |||||||||
| DB_info | Database | AceView | gene | 5Q866 | ||||||
| WormQTL | gene | WBGene00004817 | ||||||||
| NDB | locus_tag | CELE_F13A7.9 | ||||||||
| NCBI | gene | 191764 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 21 Feb 2008 15:25:29 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | skr | |||||||||
| Allele (21) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00023861 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00023862 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00023875 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00030782 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00030783 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00035793 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| Paralog | WBGene00004816 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | The skr-11 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-11(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | ||||||
| WBPaper00005129 | ||||||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in germ line based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including Lithium Chloride; stavudine; and cholesterol based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F13A7.9:wp188 | ||||||||
| Corresponding_pseudogene | F13A7.9 | |||||||||
| Other_sequence | CR09229 | |||||||||
| Experimental_info | Microarray_results (13) | |||||||||
| Expression_cluster (100) | ||||||||||
| Map_info | Map | V | Position | 10.0332 | Error | 0.000852 | ||||
| Positive | Positive_clone | F13A7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00029151 | |||||||||
| WBPaper00029221 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
