WormBase Tree Display for Gene: WBGene00004191
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WBGene00004191 | SMap | S_parent | Sequence | C11H1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | prx-1 | |||||||
Sequence_name | C11H1.4 | ||||||||
Molecular_name (6) | |||||||||
Other_name | pex-1 | Paper_evidence | WBPaper00004835 | ||||||
WBPaper00018161 | |||||||||
WBPaper00005418 | |||||||||
WBPaper00005877 | |||||||||
pex1 | Accession_evidence | EMBL | AB054992 | ||||||
C11H1.6 | Paper_evidence | WBPaper00005418 | |||||||
CELE_C11H1.4 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | prx-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00004191 | |||||
WormFlux | gene | WBGene00004191 | |||||||
NDB | locus_tag | CELE_C11H1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004191|UniProtKB=G5ED99 | |||||||
family | PTHR23077 | ||||||||
NCBI | gene | 181538 | |||||||
RefSeq | protein | NM_001381145.1 | |||||||
NM_077985.7 | |||||||||
TREEFAM | TREEFAM_ID | TF106447 | |||||||
TrEMBL | UniProtAcc | G5ED99 | |||||||
A6ZJ67 | |||||||||
UniProt_GCRP | UniProtAcc | G5ED99 | |||||||
OMIM | gene | 602136 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | prx | ||||||||
Allele (302) | |||||||||
Strain | WBStrain00035803 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00005027 | ||||||||
00005028 | |||||||||
00005029 | |||||||||
00005030 | |||||||||
00005031 | |||||||||
00005032 | |||||||||
00112456 | |||||||||
00112457 | |||||||||
00112458 | |||||||||
00112459 | |||||||||
Ortholog (35) | |||||||||
Paralog | WBGene00003119 | Caenorhabditis elegans | From_analysis (2) | ||||||
WBGene00007352 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00008053 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00004195 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00010562 | Caenorhabditis elegans | From_analysis (2) | |||||||
WBGene00013156 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | prx-1 encodes a predicted peroxin, a subfamily 2 member of the AAA (ATPases Associated with diverse cellular Activities) family that affects growth in one large-scale RNAi screen; expressed in intestinal cells throughout development. | Paper_evidence | WBPaper00004835 | |||||
WBPaper00006395 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable ATP hydrolysis activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be located in cytosol and peroxisomal membrane. Human ortholog(s) of this gene implicated in Heimler syndrome 1; peroxisome biogenesis disorder 1A; and peroxisome biogenesis disorder 1B. Is an ortholog of human PEX1 (peroxisomal biogenesis factor 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0080623 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8850) | ||||
DOID:0080476 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8850) | ||||||
DOID:0081240 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8850) | ||||||
Molecular_info | Corresponding_CDS | C11H1.4a | |||||||
C11H1.4b | |||||||||
Corresponding_CDS_history | C11H1.4:wp74 | ||||||||
Corresponding_transcript | C11H1.4a.1 | ||||||||
C11H1.4b.1 | |||||||||
Other_sequence (19) | |||||||||
Associated_feature (18) | |||||||||
Experimental_info | RNAi_result | WBRNAi00028813 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062860 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040366 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024539 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040365 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024538 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010633 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027170 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010631 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007234 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1637 | ||||||||
Expr1022255 | |||||||||
Expr1032051 | |||||||||
Expr1144429 | |||||||||
Expr2015124 | |||||||||
Expr2033362 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (82) | |||||||||
Interaction (72) | |||||||||
Map_info | Map | X | Position | 16.6804 | Error | 0.001645 | |||
Positive | Positive_clone | C11H1 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4254 | |||||||
4606 | |||||||||
5538 | |||||||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Sequence connection from [Motley AM, Plasterk RHA], 02/06/13 krb. | ||||||||
The connected sequence (C11H1.4) was previously C11H1.6 (the C11H1.4 gene was extended and incorporated C11H1.6). krb | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |