WormBase Tree Display for Gene: WBGene00004187
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| WBGene00004187 | Evidence | Person_evidence | WBPerson395 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson71 | |||||||||
| SMap | S_parent | Sequence | C50C3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | prp-8 | |||||||
| Sequence_name | C50C3.6 | ||||||||
| Molecular_name | C50C3.6 | ||||||||
| C50C3.6.1 | |||||||||
| CE00122 | |||||||||
| Other_name | CELE_C50C3.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | prp-8 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (77) | |||||||||
| Strain | WBStrain00037786 | ||||||||
| WBStrain00055589 | |||||||||
| WBStrain00055587 | |||||||||
| WBStrain00055586 | |||||||||
| WBStrain00048023 | |||||||||
| WBStrain00055590 | |||||||||
| Component_of_genotype | WBGenotype00000120 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | prp-8 is orthologous to the human gene SIMILAR TO U5 SNRNP-SPECIFIC PROTEIN (220 KD), ORTHOLOG OF S. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable pre-mRNA intronic binding activity and snRNA binding activity. Predicted to be involved in spliceosomal tri-snRNP complex assembly. Predicted to be located in nucleus. Predicted to be part of U5 snRNP and catalytic step 2 spliceosome. Expressed in germ line. Used to study retinitis pigmentosa 13. Human ortholog(s) of this gene implicated in retinitis pigmentosa 13. Is an ortholog of human PRPF8 (pre-mRNA processing factor 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:10584 | Homo sapiens | Paper_evidence | WBPaper00032287 | ||||
| Curator_confirmed | WBPerson38202 | ||||||||
| Date_last_updated | 22 May 2018 00:00:00 | ||||||||
| DOID:0110403 | Homo sapiens | Paper_evidence | WBPaper00059062 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 26 May 2022 00:00:00 | ||||||||
| Potential_model | DOID:0110403 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17340) | |||||
| DOID:10584 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17340) | ||||||
| Models_disease_asserted | WBDOannot00000523 | ||||||||
| WBDOannot00001205 | |||||||||
| WBDOannot00001206 | |||||||||
| WBDOannot00001209 | |||||||||
| WBDOannot00001210 | |||||||||
| WBDOannot00001211 | |||||||||
| WBDOannot00001212 | |||||||||
| Molecular_info | Corresponding_CDS | C50C3.6 | |||||||
| Corresponding_transcript | C50C3.6.1 | ||||||||
| Other_sequence (108) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Chronogram353 | ||||||||
| Expr5548 | |||||||||
| Expr12531 | |||||||||
| Expr12730 | |||||||||
| Expr1019555 | |||||||||
| Expr1032047 | |||||||||
| Expr1146854 | |||||||||
| Expr2015116 | |||||||||
| Expr2033354 | |||||||||
| Drives_construct | WBCnstr00002926 | ||||||||
| WBCnstr00035647 | |||||||||
| Construct_product | WBCnstr00035647 | ||||||||
| Regulate_expr_cluster | WBPaper00042477:prp-8(RNAi)_downregulated_RNAseq | ||||||||
| WBPaper00042477:prp-8(RNAi)_upregulated_RNAseq | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (160) | |||||||||
| Interaction (303) | |||||||||
| Map_info | Map | III | Position | -0.374015 | Error | 0.000205 | |||
| Positive | Positive_clone | C50C3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
