WormBase Tree Display for CDS: C50C3.6
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| C50C3.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C50C3 | |||
| Structure | Source_exons | 1 | 830 | |||
| 885 | 1122 | |||||
| 1323 | 1542 | |||||
| 1615 | 2359 | |||||
| 2408 | 3824 | |||||
| 4056 | 5057 | |||||
| 5110 | 5582 | |||||
| 5689 | 7336 | |||||
| 7459 | 7818 | |||||
| 7865 | 7921 | |||||
| DB_info | Database | SwissProt | UniProtAcc | P34369 | ||
| UniProt | UniProtAcc | P34369 | ||||
| UniProt_GCRP | UniProtAcc | P34369 | ||||
| AlphaFold | entry | P34369 | ||||
| NCBI_protein | GI_number | GI:351058628 | ||||
| TREEFAM | TREEFAM_ID | TF105613 | ||||
| Protein_id | CHROMOSOME_III | CCD66122 | 1 | |||
| DB_remark | PRP-8 protein; contains similarity to Pfam domains PF01398 (JAB1/Mov34/MPN/PAD-1 ubiquitin protease), PF08082 (PRO8NT (NUC069), PrP8 N-terminal domain), PF08083 (PROCN (NUC071) domain), PF08084 (PROCT (NUC072) domain), PF10596 (U6-snRNA interacting domain of PrP8), PF10597 (U5-snRNA binding site 2 of PrP8), PF10598 (RNA recognition motif of the spliceosomal PrP8), PF12134 (PRP8 domain IV core); contains similarity to Interpro domains IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR019581 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding), IPR012591 (PRO8NT domain), IPR042516 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily), IPR019580 (Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding), IPR027652 (Pre-mRNA-processing-splicing factor 8), IPR021983 (PRP8 domain IV core), IPR012984 (PROCT domain), IPR043173 (Prp8 RNase domain IV, fingers region), IPR043172 (Prp8 RNase domain IV, palm region), IPR012592 (PROCN domain), IPR012337 (Ribonuclease H-like superfamily), IPR019582 (RNA recognition motif, spliceosomal PrP8) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004187 | ||||
| Corresponding_transcript | C50C3.6.1 | |||||
| Corresponding_protein | CE00122 | |||||
| Corresponding_PCR_product | TH:302H10 | |||||
| cenix:302-h10 | ||||||
| mv_C50C3.6 | ||||||
| sjj2_C50C3.6 | ||||||
| sjj_C50C3.6 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (112) | ||||||
| RNAi_result (17) | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Pre-mRNA-splicing factor 8 homolog | Accession_evidence | UniProt | SP:P34369 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
