WormBase Tree Display for Gene: WBGene00003993
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| WBGene00003993 | SMap | S_parent | Sequence | B0523 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pgl-2 | Person_evidence | WBPerson632 | |||||
| Sequence_name | B0523.3 | ||||||||
| Molecular_name | B0523.3 | ||||||||
| B0523.3.1 | |||||||||
| CE20462 | |||||||||
| B0523.3.2 | |||||||||
| Other_name | CELE_B0523.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | pgl-2 | ||||||||
| DB_info | Database | AceView | gene | 3J758 | |||||
| WormQTL | gene | WBGene00003993 | |||||||
| WormFlux | gene | WBGene00003993 | |||||||
| NDB | locus_tag | CELE_B0523.3 | |||||||
| NCBI | gene | 182022 | |||||||
| RefSeq | protein | NM_001382943.1 | |||||||
| SwissProt | UniProtAcc | P34266 | |||||||
| TREEFAM | TREEFAM_ID | TF321616 | |||||||
| UniProt_GCRP | UniProtAcc | P34266 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgl | ||||||||
| Allele (125) | |||||||||
| Strain | WBStrain00034452 | ||||||||
| WBStrain00034453 | |||||||||
| WBStrain00034454 | |||||||||
| WBStrain00034455 | |||||||||
| WBStrain00034456 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041183 | ||||||||
| 00041184 | |||||||||
| 00041185 | |||||||||
| Contained_in_operon | CEOP3876 | ||||||||
| Ortholog (12) | |||||||||
| Paralog | WBGene00003992 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00003994 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | pgl-2 encodes a novel protein of 532 amino acids that, in C. elegans, is one of three PGL protein family members; PGL-2 associates with P granules during postembryonic development; PGL-2 interacts with PGL-1, an additional P granule component, in yeast two-hybrid assays, but neither protein is required for proper localization of the other. | Paper_evidence | WBPaper00024251 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 11 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in oogenesis. Located in P granule. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0523.3 | |||||||
| Corresponding_transcript | B0523.3.1 | ||||||||
| B0523.3.2 | |||||||||
| Associated_feature | WBsf993431 | ||||||||
| WBsf993432 | |||||||||
| WBsf1015470 | |||||||||
| WBsf227165 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr3001 | ||||||||
| Expr1023526 | |||||||||
| Expr1031909 | |||||||||
| Expr1143316 | |||||||||
| Expr2014861 | |||||||||
| Expr2033096 | |||||||||
| Drives_construct | WBCnstr00035757 | ||||||||
| Construct_product | WBCnstr00035757 | ||||||||
| Antibody | WBAntibody00000912 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (120) | |||||||||
| Interaction (119) | |||||||||
| Map_info | Map | III | Position | -0.152717 | Error | 0.007863 | |||
| Positive | Positive_clone | B0523 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004549 | ||||||||
| WBPaper00010104 | |||||||||
| WBPaper00012661 | |||||||||
| WBPaper00018393 | |||||||||
| WBPaper00024251 | |||||||||
| WBPaper00027298 | |||||||||
| WBPaper00033449 | |||||||||
| WBPaper00035297 | |||||||||
| WBPaper00036884 | |||||||||
| WBPaper00058683 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
