WormBase Tree Display for Gene: WBGene00003834
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WBGene00003834 | SMap | S_parent | Sequence | C15H11 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nxf | ||||||
Allele (69) | |||||||
Possibly_affected_by | WBVar02158628 | ||||||
WBVar02158629 | |||||||
WBVar02158630 | |||||||
Strain | WBStrain00029007 | ||||||
WBStrain00029025 | |||||||
WBStrain00031518 | |||||||
WBStrain00031946 | |||||||
WBStrain00047293 | |||||||
WBStrain00047294 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Ortholog (50) | |||||||
Paralog | WBGene00003835 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | nxf-1 encodes a homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA; binds RNA directly and its function has been shown to be conserved with the NXF family. | Paper_evidence | WBPaper00004473 | |||
WBPaper00005959 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Located in nuclear envelope; nucleolus; and nucleoplasm. Part of nuclear pore. Is an ortholog of human NXF1 (nuclear RNA export factor 1); NXF2 (nuclear RNA export factor 2); and NXF2B (nuclear RNA export factor 2B). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C15H11.3 | |||||
Corresponding_CDS_history | C15H11.3a:wp267 | ||||||
Corresponding_transcript | C15H11.3.1 | ||||||
Other_sequence | CBC01576_1 | ||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result | WBRNAi00040618 | Inferred_automatically | RNAi_primary | |||
WBRNAi00028925 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092211 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063059 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092212 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010797 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092210 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00066418 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9013 | ||||||
Expr14870 | |||||||
Expr14871 | |||||||
Expr14872 | |||||||
Expr14873 | |||||||
Expr1027360 | |||||||
Expr1031807 | |||||||
Expr1144676 | |||||||
Expr2014534 | |||||||
Expr2032773 | |||||||
Drives_construct | WBCnstr00035845 | ||||||
WBCnstr00041566 | |||||||
Construct_product | WBCnstr00035845 | ||||||
WBCnstr00041566 | |||||||
Antibody | WBAntibody00002133 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (102) | |||||||
Interaction (97) | |||||||
Map_info | Map | V | Position | 6.28588 | Error | 0.001447 | |
Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4552 | |||||
4553 | |||||||
Pseudo_map_position | |||||||
Reference (20) | |||||||
Remark | Sequence connection from [source BK Felber] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Please note that this publication erroneously cited nfx-1. The correct gene is nxf-1 | Paper_evidence | WBPaper00041879 | |||||
Method | Gene |