WormBase Tree Display for Gene: WBGene00003420
expand all nodes | collapse all nodes | view schema
WBGene00003420 | Evidence | CGC_data_submission | ||||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T02G5 | |||
Identity (6) | ||||||
Gene_info | Biotype | SO:0000336 | ||||
Gene_class | msh | |||||
Allele (14) | ||||||
RNASeq_FPKM (74) | ||||||
Structured_description | Concise_description | msh-4 is a partial duplication of the him-14 locus, which encodes the C. elegans MSH4 ortholog; as currently annotated in WormBase, msh-4 can encode a protein nearly identical to HIM-14 residues 631-737, differing only at three amino acids; msh-4(RNAi) results in no apparent defects. | Paper_evidence | WBPaper00003779 | ||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 19 Mar 2009 00:00:00 | |||||
Automated_description | Enriched in Z1.p; Z4.a; germline precursor cell; gon_male_dtc anterior; and gon_male_dtc posterior based on RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by six chemicals including metformin; Sirolimus; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS_history | T02G5.6:wp238 | ||||
Corresponding_pseudogene | T02G5.6a | |||||
T02G5.6b | ||||||
Other_sequence | Dviv_isotig25354 | |||||
Experimental_info | Expr_pattern | Expr1026609 | ||||
Expr1155861 | ||||||
Microarray_results (12) | ||||||
Expression_cluster (48) | ||||||
Interaction (150) | ||||||
Map_info | Map | II | Position | 0.493171 | ||
Positive | Positive_clone | T02G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference (12) | ||||||
Remark | Sequence connection from [Boulton S, Vidal M] | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
[200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.49197) | ||||||
Method | Gene |