WormBase Tree Display for Gene: WBGene00003420
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WBGene00003420 | Evidence | CGC_data_submission | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T02G5 | |||||||
Identity | Version | 3 | ||||||||
Name | CGC_name | msh-4 | Person_evidence | WBPerson1547 | ||||||
Sequence_name | T02G5.6 | |||||||||
Molecular_name | T02G5.6a | |||||||||
T02G5.6b | ||||||||||
Other_name | CELE_T02G5.6 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | msh-4 | |||||||||
DB_info | Database | AceView | gene | 2H369 | ||||||
WormQTL | gene | WBGene00003420 | ||||||||
WormFlux | gene | WBGene00003420 | ||||||||
NDB | locus_tag | CELE_T02G5.6 | ||||||||
NCBI | gene | 191708 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
2 | 28 May 2013 16:17:43 | WBPerson615 | Event | Changed_class | CDS | Pseudogene | ||||
3 | 29 May 2013 15:31:58 | WBPerson615 | Event | Changed_class | CDS | Pseudogene | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Gene_class | msh | |||||||||
Allele (14) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
Structured_description | Concise_description | msh-4 is a partial duplication of the him-14 locus, which encodes the C. elegans MSH4 ortholog; as currently annotated in WormBase, msh-4 can encode a protein nearly identical to HIM-14 residues 631-737, differing only at three amino acids; msh-4(RNAi) results in no apparent defects. | Paper_evidence | WBPaper00003779 | ||||||
Curator_confirmed | WBPerson1843 | |||||||||
Date_last_updated | 19 Mar 2009 00:00:00 | |||||||||
Automated_description | Enriched in Z1.p; Z4.a; germline precursor cell; gon_male_dtc anterior; and gon_male_dtc posterior based on RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by six chemicals including metformin; Sirolimus; and Rifampin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
Curator_confirmed (2) | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | T02G5.6:wp238 | ||||||||
Corresponding_pseudogene | T02G5.6a | |||||||||
T02G5.6b | ||||||||||
Other_sequence | Dviv_isotig25354 | |||||||||
Experimental_info | Expr_pattern | Expr1026609 | ||||||||
Expr1155861 | ||||||||||
Microarray_results (12) | ||||||||||
Expression_cluster (48) | ||||||||||
Interaction (150) | ||||||||||
Map_info | Map | II | Position | 0.493171 | ||||||
Positive | Positive_clone | T02G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Reference (12) | ||||||||||
Remark (3) | ||||||||||
Method | Gene |