WormBase Tree Display for Gene: WBGene00003088
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| WBGene00003088 | Evidence | Paper_evidence | WBPaper00006260 | ||||
|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C32C4 | ||||
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001265 | |||||
| Gene_class | lsy | ||||||
| Allele (11) | |||||||
| Strain (13) | |||||||
| In_cluster | LSY-6 | ||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation | 00106192 | ||||||
| 00106193 | |||||||
| 00106194 | |||||||
| Structured_description | Concise_description | lsy-6 encodes a microRNA and was the first microRNA discovered to have a role in nervous system development in vivo; lsy-6 is involved in the pathway for functional lateralization of the chemosensory ASE neuron; lsy-6 controls the asymmetrical expression of the gcy chemoreceptors, gcy-5 and gcy-7, in ASER and ASEL; genetic epistasis experiments indicate that the transcription of lsy-6 is regulated by lsy-2, a novel C2H2 zinc finger transcription factor; reporter gene fusion studies indicate that lsy-6 is expressed in one pair of tail neurons and seven head neurons including ASEL, but not in ASER. | Paper_evidence | WBPaper00006260 | |||
| WBPaper00024291 | |||||||
| WBPaper00027031 | |||||||
| Curator_confirmed | WBPerson1843 | ||||||
| WBPerson324 | |||||||
| Date_last_updated | 23 May 2006 00:00:00 | ||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Involved in determination of left/right asymmetry in nervous system and miRNA-mediated post-transcriptional gene silencing. Expressed in ASEL; head neurons; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_transcript | C32C4.6 | |||||
| C32C4.6a | |||||||
| C32C4.6b | |||||||
| Associated_feature | WBsf047573 | ||||||
| WBsf047579 | |||||||
| WBsf979125 | |||||||
| Experimental_info (6) | |||||||
| Map_info | Map | V | Position | 2.658 | Error | 0.010694 | |
| Positive | Positive_clone | C32C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Mapping_data | Multi_point | 4882 | |||||
| Pseudo_map_position | |||||||
| Reference (74) | |||||||
| Remark | lsy-6 was mistakenly connected to C32C4.5 | CGC_data_submission | |||||
| Rfam accession number: MI0000801 | |||||||
| lsy-6 is a microRNA | Paper_evidence | WBPaper00006260 | |||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
| Method | Gene |
