WormBase Tree Display for Gene: WBGene00003063
expand all nodes | collapse all nodes | view schema
| WBGene00003063 | Evidence | Paper_evidence | WBPaper00005707 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R13A5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | lpd-7 | Person_evidence | WBPerson545 | |||||
| Sequence_name | R13A5.12 | ||||||||
| Molecular_name | R13A5.12 | ||||||||
| R13A5.12.1 | |||||||||
| CE21123 | |||||||||
| Other_name | CELE_R13A5.12 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | lpd-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lpd | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00035922 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | lpd-7 encodes a BRCT domain-containing protein that is orthologous to Saccharomyces cerevisiae Nop7p and the vertebrate pescadillo proteins required for nucleolar assembly, ribosome biogenesis, and cell proliferation; loss of lpd-7 activity via RNAi indicates that, in C. elegans, LPD-7 is required for fat storage and for larval growth and development; based upon its similarity to the yeast and vertebrate proteins, LPD-7 is predicted to localize to the nucleolus. | Paper_evidence | WBPaper00005707 | |||||
| WBPaper00028611 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Involved in lipid storage. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex. Is an ortholog of human PES1 (pescadillo ribosomal biogenesis factor 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13A5.12 | |||||||
| Corresponding_transcript | R13A5.12.1 | ||||||||
| Other_sequence (89) | |||||||||
| Associated_feature | WBsf645348 | ||||||||
| WBsf659183 | |||||||||
| WBsf225267 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1016394 | ||||||||
| Expr1031441 | |||||||||
| Expr1155544 | |||||||||
| Expr2013254 | |||||||||
| Expr2031485 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (348) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | III | Position | -0.664342 | Error | 0.000399 | |||
| Positive | Positive_clone | R13A5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4202 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005707 | ||||||||
| WBPaper00029292 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
