WormBase Tree Display for Gene: WBGene00002983
expand all nodes | collapse all nodes | view schema
WBGene00002983 | SMap | S_parent | Sequence | C54G7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | lgx-1 | Person_evidence | WBPerson220 | |||||
Sequence_name | C54G7.3 | ||||||||
Molecular_name (27) | |||||||||
Other_name | pqn-23 | ||||||||
CELE_C54G7.3 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | lgx-1 | ||||||||
DB_info | Database | AceView | gene | XG146 | |||||
WormQTL | gene | WBGene00002983 | |||||||
WormFlux | gene | WBGene00002983 | |||||||
NDB | locus_tag | CELE_C54G7.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002983|UniProtKB=H2KZ94 | |||||||
family | PTHR45985 | ||||||||
NCBI | gene | 180825 | |||||||
RefSeq | protein | NM_001373305.2 | |||||||
NM_001373301.2 | |||||||||
NM_001373300.2 | |||||||||
NM_001373304.2 | |||||||||
NM_001373298.3 | |||||||||
NM_001373299.2 | |||||||||
NM_001373303.2 | |||||||||
NM_001373302.2 | |||||||||
NM_171690.6 | |||||||||
TREEFAM | TREEFAM_ID | TF316835 | |||||||
TrEMBL | UniProtAcc | A0A4V0IKC9 | |||||||
H2KZ94 | |||||||||
A0A4V0IK92 | |||||||||
A0A4V0IKS1 | |||||||||
A0A4V0ILL1 | |||||||||
A0A4V0IM10 | |||||||||
D7SFK4 | |||||||||
A0A4V0INJ5 | |||||||||
A0A4V0IND1 | |||||||||
UniProt_GCRP | UniProtAcc | A0A4V0ILL1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lgx | ||||||||
Allele (197) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes predicted protein with EGF-like repeats. [GS] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00110443 | ||||||||
00110444 | |||||||||
Ortholog (33) | |||||||||
Paralog | WBGene00018607 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
Structured_description | Concise_description | lgx-1 encodes a polysaccharide deacetylase. | Paper_evidence | WBPaper00041310 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 19 Jul 2012 00:00:00 | ||||||||
Automated_description | Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to be involved in carbohydrate metabolic process. Expressed in somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result (7) | ||||||||
Expr_pattern | Expr11801 | ||||||||
Expr1013811 | |||||||||
Expr1031383 | |||||||||
Expr1147169 | |||||||||
Expr2013146 | |||||||||
Expr2031378 | |||||||||
Drives_construct | WBCnstr00036306 | ||||||||
Construct_product | WBCnstr00036306 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (247) | |||||||||
Interaction (23) | |||||||||
Map_info | Map | X | Position | -4.98427 | Error | 0.063372 | |||
Positive | Positive_clone | C54G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
GS#Y7 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00041310 | ||||||||
WBPaper00064648 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |