WormBase Tree Display for Gene: WBGene00001811
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WBGene00001811 | SMap | S_parent | Sequence | C30H6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | haf-1 | Person_evidence | WBPerson36 | |||||
Sequence_name | C30H6.6 | ||||||||
Molecular_name | C30H6.6 | ||||||||
C30H6.6.1 | |||||||||
CE39331 | |||||||||
Other_name | CELE_C30H6.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | haf-1 | ||||||||
DB_info | Database | AceView | gene | 4S321 | |||||
WormQTL | gene | WBGene00001811 | |||||||
WormFlux | gene | WBGene00001811 | |||||||
NDB | locus_tag | CELE_C30H6.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001811|UniProtKB=O45278 | |||||||
family | PTHR24221 | ||||||||
NCBI | gene | 178522 | |||||||
RefSeq | protein | NM_070697.7 | |||||||
TREEFAM | TREEFAM_ID | TF105198 | |||||||
TrEMBL | UniProtAcc | O45278 | |||||||
UniProt_GCRP | UniProtAcc | O45278 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | haf | ||||||||
Allele (110) | |||||||||
Strain | WBStrain00031580 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (39) | |||||||||
Paralog (23) | |||||||||
Structured_description | Concise_description | haf-1 encodes a transmembrane protein that is a member of the ATP-binding cassette (ABC) transporter superfamily; HAF-1 transporter activity is required for peptide transport and functions as part of the mitochondrial unfolded protein response (UPRmt) signaling pathway; as part of the UPRmt, HAF-1 functions upstream of the ATFS-1 bZip transcription factor that partitions between the mitochondrion, where it is degraded under normal conditions, and the nucleus, where it localizes in response to the UPRmt; HAF-1 localizes to the the inner mitochondrial membrane. | Paper_evidence | WBPaper00035985 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 23 Oct 2012 00:00:00 | ||||||||
Automated_description | Enables peptide transmembrane transporter activity. Involved in mitochondrial unfolded protein response; peptide transport; and protein import into mitochondrial matrix. Located in mitochondrial inner membrane. Is an ortholog of human ABCB10 (ATP binding cassette subfamily B member 10). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C30H6.6 | |||||||
Corresponding_CDS_history | C30H6.6:wp151 | ||||||||
Corresponding_transcript | C30H6.6.1 | ||||||||
Other_sequence | DVC03108_1 | ||||||||
Dviv_isotig16313 | |||||||||
Dviv_isotig16312 | |||||||||
EV853081.1 | |||||||||
CBC16086_1 | |||||||||
Associated_feature | WBsf229635 | ||||||||
Experimental_info | RNAi_result | WBRNAi00011409 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029369 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041579 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113844 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3353 | ||||||||
Expr1023833 | |||||||||
Expr1031060 | |||||||||
Expr1145603 | |||||||||
Expr2012355 | |||||||||
Expr2030591 | |||||||||
Drives_construct | WBCnstr00011350 | ||||||||
WBCnstr00018526 | |||||||||
WBCnstr00036673 | |||||||||
Construct_product | WBCnstr00036673 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (91) | |||||||||
Interaction (43) | |||||||||
WBProcess | WBbiopr:00000077 | ||||||||
WBbiopr:00000079 | |||||||||
Map_info | Map | IV | Position | 16.5892 | Error | 0.027657 | |||
Positive | Positive_clone | C30H6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4778 | |||||||
Pseudo_map_position | |||||||||
Reference (24) | |||||||||
Remark | Sequence connection from Sheps JA and Baillie DL [021008 ck1] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |