WormBase Tree Display for Gene: WBGene00001803
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| WBGene00001803 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C14F11 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | lite-1 | Person_evidence | WBPerson522 | |||||
| WBPerson423 | |||||||||
| Sequence_name | C14F11.3 | ||||||||
| Molecular_name | C14F11.3 | ||||||||
| C14F11.3.1 | |||||||||
| CE29579 | |||||||||
| Other_name (2) | |||||||||
| Public_name | lite-1 | ||||||||
| DB_info | Database | AceView | gene | XG846 | |||||
| WormQTL | gene | WBGene00001803 | |||||||
| WormFlux | gene | WBGene00001803 | |||||||
| NDB | locus_tag | CELE_C14F11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001803|UniProtKB=Q17990 | |||||||
| family | PTHR21143 | ||||||||
| NCBI | gene | 180894 | |||||||
| RefSeq | protein | NM_076642.7 | |||||||
| SwissProt | UniProtAcc | Q17990 | |||||||
| TREEFAM | TREEFAM_ID | TF321557 | |||||||
| UniProt_GCRP | UniProtAcc | Q17990 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | lite-1 | ||||
| Other_name | gur-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lite | ||||||||
| Allele (104) | |||||||||
| Strain (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (28) | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00001211 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001804 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | lite-1 encodes a eight-transmembrane protein that is a member of the invertebrate family of Gustatory receptors; LITE-1 functions in neurons as an ultraviolet light receptor required for proper avoidance (photophobic) response to short-wavelength light; ectopic expression of LITE-1 in other tissues, namely body wall and vulval muscles, is sufficient to confer light-responsive muscle contraction; genetic analyses indicate that LITE-1 can stimulate locomotion independent of G protein signaling, as LITE-1 can induce locomotion in near-paralyzed synaptic signaling mutants; further, site of action studies indicate that LITE-1 functions in one or more tail neurons to mediate this light-activated forward locomotion; rescuing LITE-1::GFP fusion proteins reveal expression in the PVT and AVG neurons. | Paper_evidence | WBPaper00032087 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 11 Aug 2008 00:00:00 | ||||||||
| Automated_description | Enables blue light photoreceptor activity. Involved in locomotory behavior and response to light stimulus. Located in neuron projection; neuronal cell body; and plasma membrane. Expressed in ganglia; hyp3; and pharyngeal neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C14F11.3 | |||||||
| Corresponding_transcript | C14F11.3.1 | ||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040557 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010762 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000949 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12196 | ||||||||
| Expr12672 | |||||||||
| Expr1025219 | |||||||||
| Expr1144612 | |||||||||
| Expr2013229 | |||||||||
| Expr2031460 | |||||||||
| Drives_construct | WBCnstr00000264 | ||||||||
| WBCnstr00020588 | |||||||||
| WBCnstr00020589 | |||||||||
| WBCnstr00020590 | |||||||||
| WBCnstr00036676 | |||||||||
| Construct_product | WBCnstr00000262 | ||||||||
| WBCnstr00000264 | |||||||||
| WBCnstr00020587 | |||||||||
| WBCnstr00020589 | |||||||||
| WBCnstr00020590 | |||||||||
| WBCnstr00036676 | |||||||||
| Antibody | WBAntibody00002718 | ||||||||
| WBAntibody00002719 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (156) | |||||||||
| Interaction | WBInteraction000285492 | ||||||||
| WBInteraction000375497 | |||||||||
| WBInteraction000404186 | |||||||||
| WBInteraction000408973 | |||||||||
| WBInteraction000438074 | |||||||||
| WBProcess | WBbiopr:00000055 | ||||||||
| Map_info | Map | X | Position | -3.37427 | Error | 0.03205 | |||
| Positive | Positive_clone | C14F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4387 | |||||||
| 4420 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (44) | |||||||||
| Remark (2) | |||||||||
| Method | Gene |
