WormBase Tree Display for Gene: WBGene00001804
expand all nodes | collapse all nodes | view schema
| WBGene00001804 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZC504 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gur-3 | Person_evidence | WBPerson522 | |||||
| Sequence_name | ZC504.5 | ||||||||
| Molecular_name | ZC504.5 | ||||||||
| ZC504.5.1 | |||||||||
| CE30223 | |||||||||
| Other_name | CELE_ZC504.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | gur-3 | ||||||||
| DB_info | Database | AceView | gene | XL22 | |||||
| WormQTL | gene | WBGene00001804 | |||||||
| WormFlux | gene | WBGene00001804 | |||||||
| NDB | locus_tag | CELE_ZC504.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001804|UniProtKB=O18280 | |||||||
| family | PTHR21143 | ||||||||
| NCBI | gene | 181245 | |||||||
| RefSeq | protein | NM_077342.6 | |||||||
| SwissProt | UniProtAcc | O18280 | |||||||
| TREEFAM | TREEFAM_ID | TF321557 | |||||||
| UniProt_GCRP | UniProtAcc | O18280 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gur | ||||||||
| Allele (56) | |||||||||
| Strain | WBStrain00027622 | ||||||||
| WBStrain00032446 | |||||||||
| WBStrain00032447 | |||||||||
| WBStrain00054647 | |||||||||
| WBStrain00055582 | |||||||||
| WBStrain00055578 | |||||||||
| WBStrain00054646 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031899 | ||||||||
| 00031900 | |||||||||
| 00031901 | |||||||||
| 00109397 | |||||||||
| 00109398 | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00001211 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001803 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | gur-3 encodes a predicted seven-transmembrane protein related to the gustatory class of receptors in Drosophila. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in sensory perception of taste. Located in nucleus. Expressed in AVDL; AVDR; I2L; I2R; and I4 neuron. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC504.5 | |||||||
| Corresponding_CDS_history | ZC504.5:wp42 | ||||||||
| ZC504.5:wp71 | |||||||||
| Corresponding_transcript | ZC504.5.1 | ||||||||
| Associated_feature | WBsf1006697 | ||||||||
| WBsf237864 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021734 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058981 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038084 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9510 | ||||||||
| Expr12197 | |||||||||
| Expr1029171 | |||||||||
| Expr1162415 | |||||||||
| Expr2012346 | |||||||||
| Expr2030583 | |||||||||
| Drives_construct | WBCnstr00020591 | ||||||||
| WBCnstr00036675 | |||||||||
| Construct_product | WBCnstr00014075 | ||||||||
| WBCnstr00036675 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction (34) | |||||||||
| Anatomy_function | WBbtf0937 | ||||||||
| WBbtf0938 | |||||||||
| WBProcess | WBbiopr:00000055 | ||||||||
| Map_info | Map | X | Position | 2.18532 | Error | 0.002345 | |||
| Positive | Positive_clone | ZC504 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | [Hugh M Robertson].I've recognized five C. elegans genes as members of a large family of gustatory receptors (about 60 total) in the Drosophila genome originally described by John Carlson's laboratory. Phylogenetically they form three distinct lineages within this family, indicating that the family predates the nematode/arthropod split. In the absence of functional, mutant, or expression data, I prefer to name them in the least definitive manner possibl, but indicating that they are candidate receptors (seven-TM superfamily) related to the gustatory receptors of Drosophila. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
