WormBase Tree Display for Gene: WBGene00000960
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WBGene00000960 | SMap | S_parent | Sequence | F54G8 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | dgk | ||||||
Allele (60) | |||||||
Strain | WBStrain00035591 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (21) | |||||||
Ortholog (43) | |||||||
Paralog | WBGene00000958 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00000959 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00006483 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019428 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | dgk-3 encodes a diacylglycerol kinase that is the C. elegans ortholog of mammalian DGK-beta; dgk-3 activity is required for regulation of long-term thermotactic behavioral plasticity and for regulation of olfactory adaptation; large-scale expression studies have reported dgk-3 expression in head neurons, the intestine, and the pharyngeal lumen, while expression profiling indicates that dgk-3 is expressed in the AFD thermosensory neurons as well as a small number of additional sensory neurons. | Paper_evidence | WBPaper00002318 | |||
WBPaper00006525 | |||||||
WBPaper00024671 | |||||||
WBPaper00027044 | |||||||
WBPaper00028767 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Feb 2007 00:00:00 | ||||||
Automated_description | Predicted to enable ATP-dependent diacylglycerol kinase activity. Involved in olfactory behavior; regulation of long-term neuronal synaptic plasticity; and thermotaxis. Predicted to be located in plasma membrane. Expressed in amphid neurons; head; and pharyngeal lumen. Is an ortholog of human DGKA (diacylglycerol kinase alpha); DGKB (diacylglycerol kinase beta); and DGKG (diacylglycerol kinase gamma). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F54G8.2 | |||||
Corresponding_CDS_history | F54G8.2:wp98 | ||||||
F54G8.2:wp227 | |||||||
Corresponding_transcript | F54G8.2.1 | ||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf645468 | ||||||
WBsf993593 | |||||||
WBsf993594 | |||||||
WBsf993595 | |||||||
WBsf1015556 | |||||||
Experimental_info | RNAi_result | WBRNAi00048388 | Inferred_automatically | RNAi_primary | |||
WBRNAi00006163 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015668 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032822 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram293 | ||||||
Expr23 | |||||||
Expr6186 | |||||||
Expr11097 | |||||||
Expr1022527 | |||||||
Expr1152180 | |||||||
Expr2010865 | |||||||
Expr2029103 | |||||||
Drives_construct (3) | |||||||
Construct_product | WBCnstr00018166 | ||||||
WBCnstr00037178 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (91) | |||||||
Interaction | WBInteraction000009141 | ||||||
WBInteraction000049966 | |||||||
WBInteraction000122632 | |||||||
WBInteraction000173106 | |||||||
WBInteraction000382709 | |||||||
WBInteraction000411402 | |||||||
WBInteraction000419419 | |||||||
WBInteraction000439799 | |||||||
WBInteraction000456311 | |||||||
Map_info | Map | III | Position | 0.250771 | Error | 0.010231 | |
Positive | Positive_clone | F54G8 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4257 | |||||
4516 | |||||||
Pseudo_map_position | |||||||
Reference (16) | |||||||
Remark | Sequence connection from [Nurrish SJ], [krb 020711] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |