WormBase Tree Display for Gene: WBGene00000428
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| WBGene00000428 | SMap | S_parent | Sequence | F16H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-1 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F16H11.4 | ||||||||
| Molecular_name | F16H11.4 | ||||||||
| F16H11.4.1 | |||||||||
| CE50450 | |||||||||
| Other_name | CELE_F16H11.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-1 | ||||||||
| DB_info | Database | AceView | gene | XF268 | |||||
| WormQTL | gene | WBGene00000428 | |||||||
| WormFlux | gene | WBGene00000428 | |||||||
| NDB | locus_tag | CELE_F16H11.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000428|UniProtKB=P53547 | |||||||
| family | PTHR24340 | ||||||||
| NCBI | gene | 191614 | |||||||
| RefSeq | protein | NM_076395.7 | |||||||
| SwissProt | UniProtAcc | P53547 | |||||||
| TREEFAM | TREEFAM_ID | TF316128 | |||||||
| UniProt_GCRP | UniProtAcc | P53547 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (23) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes homeoprotein with similarities to Apis H40, Drosophila NK-1.[Hawkins and McGhee 1990] | ||||||||
| [C.elegansII] NMK. Encodes homeoprotein with similarities to Apis H40, Drosophila NK-1. [Hawkins and McGhee 1990] | |||||||||
| Strain | WBStrain00030029 | ||||||||
| WBStrain00049308 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048029 | ||||||||
| 00048030 | |||||||||
| 00048031 | |||||||||
| 00048032 | |||||||||
| 00048033 | |||||||||
| 00048034 | |||||||||
| 00048035 | |||||||||
| 00048036 | |||||||||
| 00048037 | |||||||||
| 00107386 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00000445 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000450 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000434 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000584 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000449 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000447 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-1 encodes a protein that contains a homeobox domain. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in DVC; lateral ganglion; and seam cell. Is an ortholog of human NKX1-1 (NK1 homeobox 1) and NKX1-2 (NK1 homeobox 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F16H11.4 | |||||||
| Corresponding_CDS_history | F16H11.4:wp246 | ||||||||
| Corresponding_transcript | F16H11.4.1 | ||||||||
| Other_sequence | FK803832.1 | ||||||||
| JI179732.1 | |||||||||
| NAC01630_1 | |||||||||
| BU087185.1 | |||||||||
| Associated_feature | WBsf978282 | ||||||||
| WBsf1005019 | |||||||||
| WBsf1005020 | |||||||||
| WBsf1005021 | |||||||||
| WBsf1005022 | |||||||||
| WBsf1022826 | |||||||||
| WBsf237299 | |||||||||
| WBsf237300 | |||||||||
| Transcription_factor | WBTranscriptionFactor000640 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00044827 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr7508 | ||||||||
| Expr15321 | |||||||||
| Expr15561 | |||||||||
| Expr1015000 | |||||||||
| Expr1148792 | |||||||||
| Expr1170087 | |||||||||
| Expr1200023 | |||||||||
| Expr2009866 | |||||||||
| Expr2028106 | |||||||||
| Drives_construct | WBCnstr00012653 | ||||||||
| WBCnstr00037548 | |||||||||
| Construct_product | WBCnstr00021798 | ||||||||
| WBCnstr00037548 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (46) | |||||||||
| Interaction (135) | |||||||||
| Map_info | Map | X | Position | -7.05299 | Error | 0.059955 | |||
| Positive | Positive_clone | F16H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| JM#L1001 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
