WormBase Tree Display for Gene: WBGene00000279
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| WBGene00000279 | SMap | S_parent | Sequence | F54D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cah-1 | |||||||
| Sequence_name | F54D8.4 | ||||||||
| Molecular_name | F54D8.4a | ||||||||
| F54D8.4a.1 | |||||||||
| CE51243 | |||||||||
| F54D8.4b | |||||||||
| CE51393 | |||||||||
| F54D8.4b.1 | |||||||||
| Other_name | CELE_F54D8.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cah-1 | ||||||||
| DB_info | Database | AceView | gene | 3G172 | |||||
| WormQTL | gene | WBGene00000279 | |||||||
| WormFlux | gene | WBGene00000279 | |||||||
| NDB | locus_tag | CELE_F54D8.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000279|UniProtKB=Q20781 | |||||||
| family | PTHR18952 | ||||||||
| NCBI | gene | 186231 | |||||||
| RefSeq | protein | NM_001322587.1 | |||||||
| NM_001322586.2 | |||||||||
| SwissProt | UniProtAcc | Q20781 | |||||||
| TrEMBL | UniProtAcc | A0A131MB23 | |||||||
| UniProt_GCRP | UniProtAcc | Q20781 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cah | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00002158 | ||||||||
| WBStrain00032336 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069118 | ||||||||
| 00069119 | |||||||||
| 00069120 | |||||||||
| 00069121 | |||||||||
| 00107161 | |||||||||
| 00107162 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000282 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000284 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000281 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000283 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cah-1 encodes a member of the carbonic anhydrase family. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable hydro-lyase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in extracellular region. Expressed in ciliated neurons; head ganglion; sensory neurons; and tail neurons. Is an ortholog of human CA10 (carbonic anhydrase 10) and CA11 (carbonic anhydrase 11). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D8.4a | |||||||
| F54D8.4b | |||||||||
| Corresponding_CDS_history | F54D8.4:wp252 | ||||||||
| Corresponding_transcript | F54D8.4a.1 | ||||||||
| F54D8.4b.1 | |||||||||
| Other_sequence | Dviv_isotig24094 | ||||||||
| JO470961.1 | |||||||||
| JI176291.1 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006831 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005278 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048327 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110319 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048326 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103390 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015626 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram383 | ||||||||
| Expr9206 | |||||||||
| Expr9940 | |||||||||
| Expr15869 | |||||||||
| Expr1017523 | |||||||||
| Expr1030182 | |||||||||
| Expr1152127 | |||||||||
| Expr2009695 | |||||||||
| Expr2027934 | |||||||||
| Drives_construct | WBCnstr00002918 | ||||||||
| WBCnstr00013795 | |||||||||
| WBCnstr00014949 | |||||||||
| WBCnstr00015742 | |||||||||
| WBCnstr00037610 | |||||||||
| Construct_product | WBCnstr00015742 | ||||||||
| WBCnstr00037610 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction | WBInteraction000393099 | ||||||||
| Map_info | Map | III | Position | -2.16145 | Error | 0.010328 | |||
| Positive | Positive_clone | F54D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037599 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040475 | |||||||||
| WBPaper00040634 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Hewett-Emmett D] | ||||||||
| The original cah-1 gene has been renamed to cas-1. [krb 020301] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
