WormBase Tree Display for Gene: WBGene00000122
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WBGene00000122 | SMap | S_parent | Sequence | M18 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | aly | ||||||
Allele (33) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00072102 | ||||||
00072103 | |||||||
00072104 | |||||||
00072105 | |||||||
00106836 | |||||||
Contained_in_operon | CEOP4496 | ||||||
Ortholog (47) | |||||||
Paralog | WBGene00000120 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000121 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Inparanoid_8 | |||||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015329 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | aly-3 encodes an RRM motif-containing protein orthologous to human THOC4 (OMIM:604171), and paralogous to ALY-1 and ALY-2; by orthology, ALY-3 is thought to promote recruitment of mRNA export factor to mRNAs; however, ALY-3 has no grossly obvious function in four-way RNAi assays of ALY-1/-3 and W04D2.6, and aly-3(RNAi) had no obvious effect on nuclear retention of tra-2 mRNA in the absence of TRA-1. | Paper_evidence | WBPaper00030790 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 09 Dec 2007 00:00:00 | ||||||
Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in nucleus. Is an ortholog of human ALYREF (Aly/REF export factor). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | M18.7a | |||||
Corresponding_transcript | M18.7b | ||||||
M18.7a.1 | |||||||
Other_sequence (31) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result (14) | ||||||
Expr_pattern | Expr13880 | ||||||
Expr1015108 | |||||||
Expr1030068 | |||||||
Expr1154717 | |||||||
Expr2009318 | |||||||
Expr2027554 | |||||||
Drives_construct | WBCnstr00037716 | ||||||
Construct_product (2) | |||||||
Microarray_results (24) | |||||||
Expression_cluster (130) | |||||||
Interaction (34) | |||||||
Map_info | Map | IV | Position | 5.72967 | Error | 0.002435 | |
Positive | Positive_clone | M18 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 5514 | |||||
5519 | |||||||
5280 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00013477 | ||||||
WBPaper00029295 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00063792 | |||||||
WBPaper00064012 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |