WormBase Tree Display for Gene: WBGene00000122
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WBGene00000122 | SMap | S_parent | Sequence | M18 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | aly-3 | Person_evidence | WBPerson297 | |||||
WBPerson4981 | |||||||||
Sequence_name | M18.7 | ||||||||
Molecular_name | M18.7a | ||||||||
M18.7a.1 | |||||||||
CE06198 | |||||||||
M18.7b | |||||||||
Other_name | CELE_M18.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | aly-3 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00000122 | |||||
WormFlux | gene | WBGene00000122 | |||||||
NDB | locus_tag | CELE_M18.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000122|UniProtKB=Q21559 | |||||||
family | PTHR19965 | ||||||||
NCBI | gene | 178157 | |||||||
RefSeq | protein | NR_003454.1 | |||||||
NM_001083228.6 | |||||||||
TREEFAM | TREEFAM_ID | TF313312 | |||||||
TrEMBL | UniProtAcc | Q21559 | |||||||
UniProt_GCRP | UniProtAcc | Q21559 | |||||||
RNAcentral | URSid | URS0000253FBA | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | aly | ||||||||
Allele (33) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00068500 | ||||||||
00068501 | |||||||||
00068502 | |||||||||
00068503 | |||||||||
00101611 | |||||||||
Contained_in_operon | CEOP4496 | ||||||||
Ortholog (47) | |||||||||
Paralog | WBGene00000120 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000121 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015329 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | aly-3 encodes an RRM motif-containing protein orthologous to human THOC4 (OMIM:604171), and paralogous to ALY-1 and ALY-2; by orthology, ALY-3 is thought to promote recruitment of mRNA export factor to mRNAs; however, ALY-3 has no grossly obvious function in four-way RNAi assays of ALY-1/-3 and W04D2.6, and aly-3(RNAi) had no obvious effect on nuclear retention of tra-2 mRNA in the absence of TRA-1. | Paper_evidence | WBPaper00030790 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 09 Dec 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in nucleus. Is an ortholog of human ALYREF (Aly/REF export factor). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr13880 | ||||||||
Expr1015108 | |||||||||
Expr1030068 | |||||||||
Expr1154717 | |||||||||
Expr2009318 | |||||||||
Expr2027554 | |||||||||
Drives_construct | WBCnstr00037716 | ||||||||
Construct_product | WBCnstr00037716 | ||||||||
WBCnstr00040228 | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (130) | |||||||||
Interaction (34) | |||||||||
Map_info | Map | IV | Position | 5.72967 | Error | 0.002435 | |||
Positive | Positive_clone | M18 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5514 | |||||||
5519 | |||||||||
5280 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00013477 | ||||||||
WBPaper00029295 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00063792 | |||||||||
WBPaper00064012 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |