WormBase Tree Display for Gene: WBGene00000010
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WBGene00000010 | Evidence | Author_evidence | Veljkovic E | ||||
---|---|---|---|---|---|---|---|
Verrey F | |||||||
SMap | S_parent | Sequence | Y53H1C | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | aat | ||||||
Allele (151) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00081168 | ||||||
00081169 | |||||||
00081170 | |||||||
00081171 | |||||||
00081172 | |||||||
00081173 | |||||||
00106538 | |||||||
00106539 | |||||||
00106540 | |||||||
Contained_in_operon | CEOP1950 | ||||||
Ortholog (32) | |||||||
Paralog (12) | |||||||
Structured_description | Concise_description | aat-9 encodes an amino acid transporter catalytic subunit; AAT-9 lacks the conserved cysteine residue proposed to be essential for association with a glycoprotein subunit, and when expressed alone in Xenopus ooctyes, AAT-9 can localize to the cell surface and function as an aromatic amino acid exchanger that displays substrate-activated anion conductance; nevertheless, AAT-9 activity is enhanced by co-expression with the ATG-1 and ATG-2 glycoprotein subunits; an aat-9::gfp promoter fusion directs expression in anterior neurons, including some chemosensory neurons, as well as in some anterior body wall muscles. | Paper_evidence | WBPaper00006408 | |||
WBPaper00024381 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 03 Mar 2006 00:00:00 | ||||||
Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Located in cell surface. Expressed in body wall musculature and neurons. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y53H1C.1a | |||||
Y53H1C.1b | |||||||
Corresponding_transcript | Y53H1C.1a.1 | ||||||
Y53H1C.1b.1 | |||||||
Associated_feature | WBsf976578 | ||||||
WBsf976579 | |||||||
WBsf220332 | |||||||
WBsf220333 | |||||||
Experimental_info | RNAi_result | WBRNAi00116961 | Inferred_automatically | RNAi_primary | |||
WBRNAi00004721 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037450 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004720 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr3122 | ||||||
Expr1016320 | |||||||
Expr1030005 | |||||||
Expr1160770 | |||||||
Expr2009072 | |||||||
Expr2027308 | |||||||
Drives_construct | WBCnstr00011152 | ||||||
Antibody | WBAntibody00000794 | ||||||
Microarray_results (26) | |||||||
Expression_cluster (85) | |||||||
Interaction | WBInteraction000140033 | ||||||
WBInteraction000279960 | |||||||
WBInteraction000322665 | |||||||
WBInteraction000463823 | |||||||
WBInteraction000579834 | |||||||
Map_info | Map | I | Position | 7.96457 | Error | 0.003257 | |
Positive | Positive_clone | Y53H1C | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00006408 | ||||||
WBPaper00024381 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |