WormBase Tree Display for Gene: WBGene00010419
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| WBGene00010419 | SMap | S_parent | Sequence | H28O16 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | atp-1 | Person_evidence | WBPerson237 | |||||
| Sequence_name | H28O16.1 | ||||||||
| Molecular_name | H28O16.1a | ||||||||
| H28O16.1a.1 | |||||||||
| CE18826 | |||||||||
| Other_name | phi-37 | Person_evidence | WBPerson2582 | ||||||
| CELE_H28O16.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | atp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-37 | ||||
| 3 | 01 Aug 2017 12:58:54 | WBPerson2970 | Name_change | CGC_name | atp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atp | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00003396 | ||||||||
| WBStrain00002785 | |||||||||
| WBStrain00003081 | |||||||||
| WBStrain00037556 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (27) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00000229 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004959 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006921 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012040 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | H28O16.1 encodes the C. elegans ortholog of the alpha subunit of mitochondrial ATP synthase. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 09 Jul 2014 00:00:00 | ||||||||
| Automated_description | Enables enterobactin binding activity. Involved in iron import into cell. Located in mitochondrion. Expressed in tail. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 22; mitochondrial complex V (ATP synthase) deficiency nuclear type 4 (multiple); and vascular dementia. Is an ortholog of human ATP5F1A (ATP synthase F1 subunit alpha). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111498 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:823) | ||||
| DOID:8725 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:823) | ||||||
| DOID:0070462 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:823) | ||||||
| DOID:0070461 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:823) | ||||||
| Molecular_info | Corresponding_CDS | H28O16.1a | |||||||
| Corresponding_CDS_history | H28O16.1b:wp259 | ||||||||
| H28O16.1c:wp259 | |||||||||
| H28O16.1d:wp275 | |||||||||
| Corresponding_transcript | H28O16.1a.1 | ||||||||
| Other_sequence (534) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003312 | ||||||||
| WBCnstr00004575 | |||||||||
| WBCnstr00031428 | |||||||||
| Construct_product | WBCnstr00031428 | ||||||||
| Microarray_results (47) | |||||||||
| Expression_cluster (183) | |||||||||
| Interaction (263) | |||||||||
| Map_info | Map | I | Position | 13.879 | |||||
| Positive | Positive_clone | H28O16 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024269 | ||||||||
| WBPaper00028807 | |||||||||
| WBPaper00028999 | |||||||||
| WBPaper00029254 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041022 | |||||||||
| WBPaper00049482 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055104 | |||||||||
| WBPaper00060516 | |||||||||
| WBPaper00061562 | |||||||||
| WBPaper00061870 | |||||||||
| WBPaper00062370 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00062642 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
