WormBase Tree Display for Gene: WBGene00006928
expand all nodes | collapse all nodes | view schema
| WBGene00006928 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | vit-4 | Person_evidence | WBPerson71 | |||||
| Sequence_name | F59D8.2 | ||||||||
| Molecular_name | F59D8.2 | ||||||||
| F59D8.2.1 | |||||||||
| CE26817 | |||||||||
| Other_name | F59D8.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| F59D8.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F59D8.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | vit-4 | ||||||||
| DB_info | Database | AceView | gene | XE176 | |||||
| WormQTL | gene | WBGene00006928 | |||||||
| WormFlux | gene | WBGene00006928 | |||||||
| NDB | locus_tag | CELE_F59D8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006928|UniProtKB=P18947 | |||||||
| family | PTHR23345 | ||||||||
| NCBI | gene | 180646 | |||||||
| RefSeq | protein | NM_076211.8 | |||||||
| SwissProt | UniProtAcc | P18947 | |||||||
| TREEFAM | TREEFAM_ID | TF332911 | |||||||
| UniProt_GCRP | UniProtAcc | P18947 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vit | ||||||||
| Allele (36) | |||||||||
| Legacy_information | Structural gene for vitellogenin yp170A; adjacent to vit-3. | ||||||||
| [C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL] | |||||||||
| Strain | WBStrain00032883 | ||||||||
| WBStrain00047209 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00039636 | ||||||||
| 00039637 | |||||||||
| 00039638 | |||||||||
| 00039639 | |||||||||
| 00115040 | |||||||||
| 00115041 | |||||||||
| Ortholog (92) | |||||||||
| Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59D8.2 | |||||||
| Corresponding_transcript | F59D8.2.1 | ||||||||
| Other_sequence (125) | |||||||||
| Associated_feature | WBsf1004666 | ||||||||
| WBsf237187 | |||||||||
| Experimental_info | RNAi_result (42) | ||||||||
| Expr_pattern (3) | |||||||||
| Drives_construct | WBCnstr00034092 | ||||||||
| Construct_product | WBCnstr00034092 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (389) | |||||||||
| Interaction (61) | |||||||||
| Map_info | Map | X | Position | -10.0749 | Error | 0.015222 | |||
| Positive | Positive_clone | F59D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| YOLK3-8 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000783 | ||||||||
| WBPaper00000803 | |||||||||
| WBPaper00000808 | |||||||||
| WBPaper00000873 | |||||||||
| WBPaper00000907 | |||||||||
| WBPaper00001442 | |||||||||
| WBPaper00001561 | |||||||||
| WBPaper00001660 | |||||||||
| WBPaper00001722 | |||||||||
| WBPaper00001841 | |||||||||
| WBPaper00002006 | |||||||||
| WBPaper00003452 | |||||||||
| WBPaper00006232 | |||||||||
| WBPaper00014769 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00026592 | |||||||||
| WBPaper00041022 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00050313 | |||||||||
| WBPaper00051305 | |||||||||
| WBPaper00053100 | |||||||||
| WBPaper00059995 | |||||||||
| WBPaper00061341 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00061667 | |||||||||
| Remark | F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
