WormBase Tree Display for Gene: WBGene00004876
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WBGene00004876 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K11G12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | smf-1 | Person_evidence | WBPerson168 | |||||
Sequence_name | K11G12.4 | ||||||||
Molecular_name | K11G12.4a | ||||||||
K11G12.4a.1 | |||||||||
CE41828 | |||||||||
K11G12.4b | |||||||||
Other_name | CELE_K11G12.4 | Accession_evidence | NDB | BX284606 | |||||
Public_name | smf-1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | smf | ||||||||
Allele (54) | |||||||||
Strain | WBStrain00032188 | ||||||||
WBStrain00021956 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (26) | |||||||||
Contained_in_operon | CEOPX080 | ||||||||
Ortholog (33) | |||||||||
Paralog (2) | |||||||||
Structured_description | Concise_description | smf-1 encodes one of three C. elegans divalent-metal ion transporters (DMTs) orthologous to the mammalian DMT1 transporters and Saccharomyces cerevisiae Smf proteins; in C. elegans, SMF-1 plays a minor role in manganese uptake, although mutations in smf-1 do display an increased tolerance to manganese exposure; SMF-1 is broadly expressed fromlate embryogenesis through adulthood, with strongest expression seen in the intestine and its associated gland cells; in epithelia, SMF-1 displays partially overlapping localization at the apical plasma membrane with SMF-3; smf-1 transcription is regulated in response to manganese; when expressed in Saccharomyces cerevisiae, smf-1 can rescue the EGTA hypersensitivity of Smf1+2 mutants. | Paper_evidence | WBPaper00035485 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 04 Aug 2010 00:00:00 | ||||||||
Automated_description | Predicted to enable cadmium ion transmembrane transporter activity; iron ion transmembrane transporter activity; and manganese ion transmembrane transporter activity. Involved in monoatomic cation homeostasis; negative regulation of cellular response to manganese ion; and response to manganese ion. Located in apical plasma membrane. Expressed in several structures, including excretory cell; hermaphrodite gonad; intestine; nerve ring; and neurons. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); leishmaniasis (multiple); and neurodegenerative disease (multiple). Is an ortholog of human SLC11A1 (solute carrier family 11 member 1) and SLC11A2 (solute carrier family 11 member 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model (25) | ||||||||
Molecular_info | Corresponding_CDS | K11G12.4a | |||||||
Corresponding_CDS_history | K11G12.4:wp129 | ||||||||
K11G12.4a:wp184 | |||||||||
K11G12.4b:wp248 | |||||||||
Corresponding_transcript | K11G12.4b | ||||||||
K11G12.4a.1 | |||||||||
Other_sequence (32) | |||||||||
Associated_feature | WBsf237512 | ||||||||
Experimental_info | RNAi_result | WBRNAi00017020 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050614 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108000 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082085 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108005 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00050613 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082079 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076571 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082080 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082083 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8811 | ||||||||
Expr8859 | |||||||||
Expr12160 | |||||||||
Expr1015427 | |||||||||
Expr1032417 | |||||||||
Expr1154320 | |||||||||
Expr2015904 | |||||||||
Expr2034137 | |||||||||
Drives_construct | WBCnstr00013568 | ||||||||
WBCnstr00019898 | |||||||||
WBCnstr00020298 | |||||||||
WBCnstr00035346 | |||||||||
Construct_product | WBCnstr00013568 | ||||||||
WBCnstr00013569 | |||||||||
WBCnstr00019900 | |||||||||
WBCnstr00035346 | |||||||||
Antibody | WBAntibody00001996 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (93) | |||||||||
Interaction (35) | |||||||||
WBProcess | WBbiopr:00000096 | ||||||||
Map_info | Map | X | Position | -2.5294 | Error | 0.00832 | |||
Positive | Positive_clone | K11G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4665 | |||||||
4666 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00011538 | ||||||||
WBPaper00015647 | |||||||||
WBPaper00031384 | |||||||||
WBPaper00032562 | |||||||||
WBPaper00033230 | |||||||||
WBPaper00033965 | |||||||||
WBPaper00035236 | |||||||||
WBPaper00035259 | |||||||||
WBPaper00035485 | |||||||||
WBPaper00037982 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00039106 | |||||||||
WBPaper00040550 | |||||||||
WBPaper00041703 | |||||||||
WBPaper00046532 | |||||||||
WBPaper00050484 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00059268 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |