WormBase Tree Display for Gene: WBGene00001079

WBGene00001079 SMap: S_parent: Sequence: T22B3
  Identity: Version: 1
    Name: CGC_name: dpy-20 Person_evidence: WBPerson261
      Sequence_name: T22B3.1
      Molecular_name: T22B3.1
        T22B3.1.1
        CE40520
      Other_name: CELE_T22B3.1 Accession_evidence: NDB BX284604
      Public_name: dpy-20
    DB_info: Database: AceView gene 4M462
        WormQTL gene WBGene00001079
        WormFlux gene WBGene00001079
        NDB locus_tag CELE_T22B3.1
        NCBI gene 178105
        RefSeq protein NM_069814.6
        SwissProt UniProtAcc P34807
        TREEFAM TREEFAM_ID TF320341
        UniProt_GCRP UniProtAcc P34807
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dpy
    Reference_allele: WBVar00143888
    Allele (68)
    Legacy_information: e1282ts : medium dumpy (20x) weak dumpy (15x) strong dumpy round- nosed (25x). ES3 (25x all stages). ME2 (20x). NA4 (other alleles all strong dumpy (20x) almost inviable (15x) : e1362 e1415 e2017amber).
      See also e1362, e1415, e1422, e2017, e2480, s1711, s1774, s1776, s2033
      [C.elegansII] e1282ts : medium dumpy (20C), weak dumpy (15C), strong dumpy, round-nosed (25C). TSPduring L1 and L2 stages. ES3 (25C all stages). ME2 (20C). OA>10: other alleles mostly severe round-headed dumpy (20C), inviable or almost inviable (15C), e1362,e1415, cn142 (strongest allele), e2017amb (slightly weaker), cn322, etc. m474::Tc1 : strong dumpy, reverts to Dpy (m474s2033)or wild type (m474m495). Cloned: rare 1.9 kb RNA, most abundant in L2; encodes predicted 359aa novel protein. [Hosono et al. 1982; Clark et al. 1995; BC]
    Strain (177)
    RNASeq_FPKM (74)
    GO_annotation: 00044559
      00044560
      00044561
      00044562
      00108206
    Ortholog (27)
    Structured_description: Concise_description: dpy-20 encodes a BED zinc finger protein, with no known homologs outside of nematodes, that is required for normal body morphology. Paper_evidence: WBPaper00000609
            WBPaper00002182
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables sequence-specific double-stranded DNA binding activity. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T22B3.1
    Corresponding_CDS_history: T22B3.1:wp166
    Corresponding_transcript: T22B3.1.1
    Other_sequence (5)
    Associated_feature: WBsf668360
      WBsf997910
      WBsf997911
      WBsf997912
      WBsf1018244
      WBsf1018245
      WBsf1018246
    Transcription_factor: WBTranscriptionFactor000478
  Experimental_info: RNAi_result (17)
    Expr_pattern: Expr1012656
      Expr1157340
      Expr2011063
      Expr2029300
    Drives_construct: WBCnstr00006715
      WBCnstr00006803
      WBCnstr00019441
      WBCnstr00037093
    Construct_product (5)
    Microarray_results (21)
    Expression_cluster (184)
    Interaction (39)
  Map_info: Map: IV Position: 5.21542 Error: 0.003855
    Well_ordered
    Positive: Inside_rearr: nDf27
        sDf8
      Positive_clone: BC#L302
        T22B3 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: nDf28
        mDp4
    Mapping_data: 2_point (21)
      Multi_point (169)
      Pos_neg_data (28)
    Landmark_gene
  Reference: WBPaper00000608
    WBPaper00000609
    WBPaper00000797
    WBPaper00000813
    WBPaper00000875
    WBPaper00001009
    WBPaper00001011
    WBPaper00001177
    WBPaper00001328
    WBPaper00001437
    WBPaper00001522
    WBPaper00001573
    WBPaper00001615
    WBPaper00001639
    WBPaper00001709
    WBPaper00001724
    WBPaper00001736
    WBPaper00001756
    WBPaper00001793
    WBPaper00001852
    WBPaper00002182
    WBPaper00002275
    WBPaper00003339
    WBPaper00004404
    WBPaper00004545
    WBPaper00005079
    WBPaper00005272
    WBPaper00006103
    WBPaper00010191
    WBPaper00011068
    WBPaper00011078
    WBPaper00011182
    WBPaper00011433
    WBPaper00012677
    WBPaper00013759
    WBPaper00013827
    WBPaper00013864
    WBPaper00013901
    WBPaper00013927
    WBPaper00013987
    WBPaper00014024
    WBPaper00014074
    WBPaper00014102
    WBPaper00014147
    WBPaper00014152
    WBPaper00014177
    WBPaper00014178
    WBPaper00014270
    WBPaper00014273
    WBPaper00014313
    WBPaper00014349
    WBPaper00014390
    WBPaper00014564
    WBPaper00014565
    WBPaper00014596
    WBPaper00014798
    WBPaper00014800
    WBPaper00014809
    WBPaper00014840
    WBPaper00014963
    WBPaper00015014
    WBPaper00015124
    WBPaper00015247
    WBPaper00015254
    WBPaper00015385
    WBPaper00015440
    WBPaper00015526
    WBPaper00015527
    WBPaper00015528
    WBPaper00015529
    WBPaper00015530
    WBPaper00015606
    WBPaper00015728
    WBPaper00016204
    WBPaper00016263
    WBPaper00016312
    WBPaper00016316
    WBPaper00016371
    WBPaper00016382
    WBPaper00016446
    WBPaper00016504
    WBPaper00016536
    WBPaper00016569
    WBPaper00017254
    WBPaper00017996
    WBPaper00018036
    WBPaper00021061
    WBPaper00021083
    WBPaper00021093
    WBPaper00021779
    WBPaper00022242
    WBPaper00023124
    WBPaper00023444
    WBPaper00023480
    WBPaper00023932
    WBPaper00024450
    WBPaper00025404
    WBPaper00026328
    WBPaper00026593
    WBPaper00026726
    WBPaper00027309
    WBPaper00027319
    WBPaper00027661
    WBPaper00029013
    WBPaper00029020
    WBPaper00030994
    WBPaper00031003
    WBPaper00043908
  Method: Gene