WormBase Tree Display for Gene: WBGene00000496
expand all nodes | collapse all nodes | view schema
WBGene00000496 | SMap | S_parent | Sequence | T25G3 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | chs | ||||||
Allele (57) | |||||||
Strain | WBStrain00031890 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (26) | |||||||
Contained_in_operon | CEOP1400 | ||||||
Ortholog (42) | |||||||
Paralog | WBGene00000497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | chs-1 encodes a chitin synthase, paralogous to CHS-2; chs-1 is requiredfor embryonic chitin synthesis, eggshell synthesis and osmoticintegrity, error-free chromosomal segregation during meiosis, polar bodyextrusion, association of the sperm pronucleus/centrosome complex (SPCC)with the early embryonic cortex, localization of PAR-2 in early embryos,posterior localization of P granules or PIE-1, and pseudocleavage; CHS-1is also, independently of chitin synthesis, required for normallocalization of MBK-2 to cortex and punctae in early embryos; CHS-1 isdispensable for synthesis of pharyngeal cuticle, since chs-1(ok1120)mutants have it normally; CHS-1 localizes to the oocyte plasma membrane and .cell cortex | Paper_evidence | WBPaper00004881 | |||
WBPaper00006390 | |||||||
WBPaper00012846 | |||||||
WBPaper00026721 | |||||||
WBPaper00028588 | |||||||
WBPaper00029233 | |||||||
WBPaper00031014 | |||||||
WBPaper00035426 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 16 Nov 2010 00:00:00 | ||||||
Automated_description | Predicted to enable chitin synthase activity. Involved in cell wall chitin biosynthetic process; eggshell formation; and positive regulation of protein localization to cell cortex. Located in cell cortex and plasma membrane. Expressed in Psub1. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T25G3.2 | |||||
Corresponding_CDS_history | T25G3.2:wp149 | ||||||
Corresponding_transcript | T25G3.2.1 | ||||||
T25G3.2.2 | |||||||
Other_sequence (54) | |||||||
Associated_feature | WBsf643461 | ||||||
WBsf643462 | |||||||
WBsf656537 | |||||||
WBsf656538 | |||||||
WBsf218023 | |||||||
WBsf218024 | |||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr3655 | ||||||
Expr4906 | |||||||
Expr11042 | |||||||
Expr14401 | |||||||
Expr1011456 | |||||||
Expr1030292 | |||||||
Expr1157706 | |||||||
Expr2009999 | |||||||
Expr2028240 | |||||||
Drives_construct | WBCnstr00011576 | ||||||
WBCnstr00037497 | |||||||
Construct_product | WBCnstr00001287 | ||||||
WBCnstr00019030 | |||||||
WBCnstr00037497 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (168) | |||||||
Interaction (188) | |||||||
Map_info | Map | I | Position | 2.13842 | Error | 0.012536 | |
Positive | Positive_clone | T25G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4887 | |||||
5298 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00004881 | ||||||
WBPaper00010668 | |||||||
WBPaper00010809 | |||||||
WBPaper00026113 | |||||||
WBPaper00026721 | |||||||
WBPaper00027938 | |||||||
WBPaper00028588 | |||||||
WBPaper00029024 | |||||||
WBPaper00030694 | |||||||
WBPaper00031014 | |||||||
WBPaper00031064 | |||||||
WBPaper00031129 | |||||||
WBPaper00035426 | |||||||
WBPaper00036882 | |||||||
WBPaper00037715 | |||||||
WBPaper00041423 | |||||||
WBPaper00045573 | |||||||
WBPaper00046691 | |||||||
WBPaper00047153 | |||||||
WBPaper00052117 | |||||||
WBPaper00058103 | |||||||
WBPaper00062623 | |||||||
WBPaper00064315 | |||||||
Remark | Gene was renamed from chi-1 to chs-1 at request of CGC, note that the other name 'chs-2' is from the Brugia malayi ortholog...this ortholog may be renamed in the future to clarify the situation. | CGC_data_submission | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |