WormBase Tree Display for Gene: WBGene00000380
expand all nodes | collapse all nodes | view schema
WBGene00000380 | SMap | S_parent | Sequence | CHROMOSOME_III | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cct | ||||||
Allele (109) | |||||||
Legacy_information | [C.elegansII] NMK. Encodes one of 7-9 related subunits of eukaryotic cytosolic chaperonin CCT. Ortholog of mouse Ccte (68% aa sequence identity)[PC] | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Contained_in_operon | CEOP3192 | ||||||
Ortholog (32) | |||||||
Paralog | WBGene00000377 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00000378 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000379 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020391 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00021934 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00000381 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00018782 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00002025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00004089 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | cct-5 encodes, by alternative splicing, two isoforms of a putative epsilon subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT5 (OMIM:610150, mutated in sensory neuropathy with spastic paraplegia); CCT-5 represses SKN-1-dependent transcription of gst-4; in mass RNAi assays, cct-5 is required for normal embryonic osmotic integrity, transgene subcellular localization, viability (throughout the life cycle), fertility, vulval development, and locomotion. | Paper_evidence (11) | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson567 | |||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||
Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Part of chaperonin-containing T-complex. Is an ortholog of human CCT5 (chaperonin containing TCP1 subunit 5). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C07G2.3 | |||||
Corresponding_CDS_history | C07G2.3:wp67 | ||||||
C07G2.3b:wp275 | |||||||
Corresponding_transcript | C07G2.3.1 | ||||||
Other_sequence (202) | |||||||
Associated_feature (25) | |||||||
Experimental_info | RNAi_result | WBRNAi00081623 | Inferred_automatically | RNAi_primary | |||
WBRNAi00100724 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024500 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00071269 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00108973 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040024 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099771 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099165 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099367 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099569 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085362 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027654 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076095 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00100911 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00108918 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00108808 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109028 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00064953 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00112125 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040023 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00100350 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00099976 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008363 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109082 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106302 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00100163 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002773 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00100537 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090966 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067612 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00108863 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002667 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017478 | ||||||
Expr1030206 | |||||||
Expr1144097 | |||||||
Expr2009773 | |||||||
Expr2028013 | |||||||
Drives_construct | WBCnstr00037583 | ||||||
Construct_product | WBCnstr00037583 | ||||||
Antibody | WBAntibody00000158 | ||||||
WBAntibody00002551 | |||||||
Microarray_results (34) | |||||||
Expression_cluster (169) | |||||||
Interaction (101) | |||||||
Anatomy_function | WBbtf0414 | ||||||
Map_info | Map | III | Position | -3.14573 | Error | 0.001936 | |
Positive | Positive_clone | C07G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (19) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |