WormBase Tree Display for Gene: WBGene00045401
expand all nodes | collapse all nodes | view schema
WBGene00045401 | SMap | S_parent | Sequence | T26F2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | eol-1 | Paper_evidence | WBPaper00045830 | |||
Person_evidence | WBPerson1627 | ||||||
Sequence_name | T26F2.3 | ||||||
Molecular_name | T26F2.3 | ||||||
T26F2.3.1 | |||||||
CE41028 | |||||||
T26F2.3.2 | |||||||
Other_name | CELE_T26F2.3 | Accession_evidence | NDB | BX284605 | |||
Public_name | eol-1 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | eol | ||||||
Allele (35) | |||||||
Possibly_affected_by | WBVar02157243 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (18) | |||||||
Ortholog (50) | |||||||
Paralog | WBGene00001050 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00008561 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010821 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010822 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00010825 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00012959 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00012960 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00012961 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00045308 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00050902 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||
WBGene00077571 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||
Structured_description | Concise_description | eol-1 encodes a homolog of vertebrate DXO/Dom3Z, a decapping and exoribonuclease protein that functions in pre-mRNA quality control; in C. elegans, EOL-1 activity is required in the URX sensory neurons for inhibition of olfactory learning; mouse Dom3Z can functionally substitute for C. elegans EOL-1, demonstrating conservation of activity for these proteins; in adult hermaphrodites, an eol-1::gfp promoter fusion is expressed in several head and tail neurons, including URX, AVF, and PQR, and in reproductive tissues. | Paper_evidence | WBPaper00045830 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 22 Dec 2014 00:00:00 | ||||||
Automated_description | Predicted to enable 5'-3' exonuclease activity; mRNA 5'-diphosphatase activity; and mRNA binding activity. Involved in regulation of olfactory learning. Predicted to be located in cytosol and nucleus. Expressed in AVF; oxygen sensory neurons; and reproductive system. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T26F2.3 | |||||
Corresponding_CDS_history | T26F2.3:wp195 | ||||||
T26F2.3:wp215 | |||||||
Corresponding_transcript (2) | |||||||
Other_sequence | CBC10792_1 | ||||||
Associated_feature | WBsf234889 | ||||||
Experimental_info | RNAi_result | WBRNAi00054220 | Inferred_automatically | RNAi_primary | |||
WBRNAi00019270 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12008 | ||||||
Expr15788 | |||||||
Expr1019371 | |||||||
Expr1157766 | |||||||
Expr2011336 | |||||||
Expr2029572 | |||||||
Drives_construct | WBCnstr00020068 | ||||||
WBCnstr00020069 | |||||||
WBCnstr00020070 | |||||||
WBCnstr00023236 | |||||||
Construct_product | WBCnstr00020068 | ||||||
WBCnstr00023236 | |||||||
WBCnstr00042520 | |||||||
Microarray_results (16) | |||||||
Expression_cluster (290) | |||||||
Map_info | Map | V | Position | 5.86927 | |||
Positive | Positive_clone | T26F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00045830 | ||||||
WBPaper00051856 | |||||||
WBPaper00060692 | |||||||
WBPaper00061319 | |||||||
WBPaper00064708 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |