WormBase Tree Display for Gene: WBGene00109569
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WBGene00109569 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Identity | Version | 6 | ||||
Name | CGC_name | Ppa-lin-39 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA20015 | |||||
Molecular_name | PPA20015 | |||||
PPA20015.1 | ||||||
PP58478 | ||||||
Other_name | GENEPREDICTION_SNAP300000076831 | |||||
GENEPREDICTION_SNAP300000076830 | ||||||
UMM-S66-6.41 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-lin-39 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (6) | |||||
Acquires_merge | WBGene00109568 | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | lin | |||||
RNASeq_FPKM | WBls:0000032 | 33.3505 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 25.5602 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
33.3505 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
43.33 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
GO_annotation | 00182361 | |||||
00182362 | ||||||
00182363 | ||||||
00182364 | ||||||
Ortholog (31) | ||||||
Paralog | WBGene00096454 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
WBGene00103778 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
WBGene00109180 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
WBGene00109566 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
WBGene00195120 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
WBGene00204655 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | Ppa-lin-39 encodes a homeodomain protein homologous to the Deformed and Sex combs reduced family of homeodomain proteins; Ppa-lin-39 is required for specification of mid-body region cell fates, including those of the VC neurons and the vulval precursor cells (VPCs), during postembryonic development; P(5-8).p in the central body region die of programmed cell death in Ppa-lin-39 mutants and thereby, adopt the fate of the anterior and posterior lineage homologs P(1-4,9-11).p; Cel-lin-39 and Ppa-lin-39 provide positional information to the VPCs in a similar manner; Ppa-lin-39, in contrast to Cel-lin-39, is not required as a transcription factor in response to the inductive signal for vulva formation. | Paper_evidence | WBPaper00003251 | ||
Person_evidence | WBPerson606 | |||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 09 Jul 2010 00:00:00 | |||||
Automated_description | Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans lin-39. In C. elegans, lin-39 is involved in several processes, including positive regulation of DNA-templated transcription; positive regulation of developmental process; and regulation of cell division. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA20015 | ||||
Corresponding_transcript | PPA20015.1 | |||||
Other_sequence | Oden_isotig08864 | |||||
MJC04516_1 | ||||||
Dviv_isotig12886 | ||||||
CBC03455_1 | ||||||
FC544919.1 | ||||||
MJ05027 | ||||||
Oden_isotig08863 | ||||||
JI256514.1 | ||||||
ES564842.1 | ||||||
EX537730.1 | ||||||
BQ804146.1 | ||||||
EX545993.1 | ||||||
Oden_isotig08861 | ||||||
Acan_isotig08519 | ||||||
TSC09600_1 | ||||||
JI182787.1 | ||||||
Oden_isotig08862 | ||||||
FE919061.1 | ||||||
ASC30043_1 | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_17316 | ||||
GPL14372_Probes_17317 | ||||||
GPL14372_Probes_67222 | ||||||
GPL14372_Probes_67223 | ||||||
GPL14372_Probes_67224 | ||||||
GPL14372_Probes_67225 | ||||||
GPL14372_Probes_67226 | ||||||
Interaction | WBInteraction000557066 | |||||
Reference (15) | ||||||
Remark | [190208 pad] The CGC name Ppa-lin-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[210528 pad] The CGC name Ppa-lin-39 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |