WormBase Tree Display for Gene: WBGene00018290

WBGene00018290 SMap: S_parent: Sequence: F41E6
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation: 00028095
      00028096
      00028097
      00123469
    Ortholog (37)
    Paralog: WBGene00011976 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016497 Caenorhabditis elegans From_analysis: Panther
      WBGene00016961 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022027 Caenorhabditis elegans From_analysis: Panther
      WBGene00020025 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to be located in multivesicular body. Is an ortholog of human CHMP5 (charged multivesicular body protein 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F41E6.9
    Corresponding_transcript: F41E6.9.1
    Other_sequence: ES741608.1
      XIC01804_1
      Acan_isotig11865
      Oden_isotig03066
      GW412303.1
      Oden_isotig03070
      Dviv_isotig11289
      Oden_isotig03069
      CJC02946_1
      HC03783
      MJC00343_1
      CRC02534_1
      Tcol_isotig04531
      MI06895
      CK726030.1
      JI217257.1
      PSC00913_1
      PTC00013_1
      GW408086.1
      AJ427472.2
      WBC01385_1
      EX010584.1
      Dviv_isotig11291
      PPC01754_1
      ES409860.1
      Tcol_isotig04533
      EX010767.1
      Tcol_isotig04530
      EX006912.1
      PT00545
      CBC03038_1
      SS01508
      EX916469.1
      PP02487
      MJ00121
      ES739631.1
      BMC00384_1
      Name_isotig01374
      XI02361
      Oden_isotig03065
      Oden_isotig03063
      TVC00713_1
      OOC00004_1
      WBC03308_1
      AS01288
      Oden_isotig03067
      JI459726.1
      FK801089.1
      Tcol_isotig04534
      Dviv_isotig11290
      Oden_isotig03064
      HCC02124_1
      MHC00926_1
      Hbac_isotig03404
      TV00127
      HBC00612_1
      BUC01037_1
      ES743578.1
      NB08853
      MIC03325_1
      Tcol_isotig04532
      BE202298.1
      JO470043.1
      ASC10024_1
      Dviv_isotig11292
      OVC06436_1
      CK726151.1
      SSC00356_1
      Tcir_isotig05417
      NBC05537_1
      MH03532
      Oden_isotig03068
      CR01090
    Associated_feature: WBsf652857
      WBsf655571
      WBsf981969
      WBsf1000707
      WBsf1020060
      WBsf234107
      WBsf234108
      WBsf234109
      WBsf234110
  Experimental_info: RNAi_result: WBRNAi00002255 Inferred_automatically: RNAi_primary
      WBRNAi00046999 Inferred_automatically: RNAi_primary
      WBRNAi00032095 Inferred_automatically: RNAi_primary
      WBRNAi00002149 Inferred_automatically: RNAi_primary
      WBRNAi00076409 Inferred_automatically: RNAi_primary
      WBRNAi00014752 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014761
      Expr1037877
      Expr1150863
      Expr2018038
      Expr2036175
    Drives_construct: WBCnstr00026634
    Construct_product: WBCnstr00026634
    Microarray_results (20)
    Expression_cluster (92)
    Interaction (42)
  Map_info: Map: V Position: 1.48344
    Positive: Positive_clone: F41E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00062371
    WBPaper00065275
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene