WormBase Tree Display for Gene: WBGene00009006
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WBGene00009006 | SMap | S_parent | Sequence | F21D5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pgm-3 | Person_evidence | WBPerson555 | |||||
Sequence_name | F21D5.1 | ||||||||
Molecular_name | F21D5.1 | ||||||||
F21D5.1.1 | |||||||||
CE03244 | |||||||||
Other_name | CELE_F21D5.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | pgm-3 | ||||||||
DB_info | Database (13) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | pgm-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pgm | ||||||||
Allele (38) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Contained_in_operon | CEOP4300 | ||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00012803 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00013690 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019890 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | F21D5.1 encodes a putative phosphoacetylglucosamine mutase orthologousto human PGM3 (OMIM:172100); F21D5.1 is thought to catalyse the thirdstep of the hexosamine pathway to UDP-N-acetylglucosamine orUDP-N-acetylgalactosamine; F21D5.1 transcripts are enriched duringoogenesis; F21D5.1(RNAi) animals have an osmotically-sensitive embryoniclethal phenotype, presumably because of defects in chitin and eggshellsynthesis. | Paper_evidence | WBPaper00006390 | |||||
WBPaper00025054 | |||||||||
WBPaper00028588 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 07 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process. Human ortholog(s) of this gene implicated in cervical cancer; immunodeficiency 23; and teratoma. Is an ortholog of human PGM3 (phosphoglucomutase 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model (3) | ||||||||
Molecular_info | Corresponding_CDS | F21D5.1 | |||||||
Corresponding_transcript | F21D5.1.1 | ||||||||
Other_sequence | Acan_isotig05947 | ||||||||
SR03825 | |||||||||
Tcol_isotig09436 | |||||||||
CJC06255_1 | |||||||||
EX558494.1 | |||||||||
ES413013.1 | |||||||||
EX544727.1 | |||||||||
AE01778 | |||||||||
EY462941.1 | |||||||||
HBC11000_1 | |||||||||
FC819202.1 | |||||||||
Oden_isotig10498 | |||||||||
JI168202.1 | |||||||||
EX558728.1 | |||||||||
EX502994.1 | |||||||||
Name_isotig07001 | |||||||||
Oden_isotig10499 | |||||||||
BMC01108_1 | |||||||||
OOC00137_1 | |||||||||
Tcir_isotig07552 | |||||||||
Hbac_isotig06532 | |||||||||
ACC22498_1 | |||||||||
AYC00090_1 | |||||||||
ACC00990_1 | |||||||||
DN190165.1 | |||||||||
EX551050.1 | |||||||||
Name_isotig08916 | |||||||||
Tcol_isotig09437 | |||||||||
ACC26617_1 | |||||||||
GR12142 | |||||||||
Oden_isotig10501 | |||||||||
Acan_isotig05946 | |||||||||
TSC02051_1 | |||||||||
SRC05058_1 | |||||||||
ACC08717_1 | |||||||||
Oden_isotig10500 | |||||||||
CJC11696_1 | |||||||||
Dviv_isotig23892 | |||||||||
EY470299.1 | |||||||||
GRC00900_1 | |||||||||
Associated_feature | WBsf646186 | ||||||||
WBsf228731 | |||||||||
WBsf228732 | |||||||||
WBsf228733 | |||||||||
Experimental_info | RNAi_result | WBRNAi00008674 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025164 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085828 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00045190 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031215 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024271 | ||||||||
Expr1033921 | |||||||||
Expr1149130 | |||||||||
Expr2002821 | |||||||||
Expr2021038 | |||||||||
Drives_construct | WBCnstr00032531 | ||||||||
Construct_product | WBCnstr00032531 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (155) | |||||||||
Interaction (279) | |||||||||
Map_info | Positive | Positive_clone | F21D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 3.95739 | |||||||
Reference | WBPaper00029024 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00057849 | |||||||||
Method | Gene |